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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATGTGAGAGGCAATAATTTGACTGGTACCGTACCTGACAGCATTGGGAACTGCACAAGTTTTGAAATCTTGTATGTTGTGTATTTGGTATTTGGTATTTGgtatgttaaatatttgatttgatttccaataattttgtcctcattgtcactttcttgtttcattgaatttcag

Basic information

species Glycine max
transcript GLYMA20G29010.1
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA20G29010.1 (Glycine max), 5'ss of exon 6
lower sequence: Vv16s0022g02030.t01 (Vitis vinifera), 5'ss of exon 8
--ATGTGAGAGGCAATAATTTGACTGGTACCGTACCTGACAGCATTGGGAACTGCACAAGTTTTGAAATCTTGTATGTTGTGTATTTGGTATTTGgtatttggtatgttaaatatttgatttgatttccaataattttgtcctcattgtcactttcttgtttcattgaatttcag
  |||| |||||||||||| ||||||| ||  | ||||| ||||| || ||||| ||||| ||||||||| ||||||||   |  || | |  ||    || |  | ||     | |  ||  || || | |||  ||    | |||     ||| ||| ||    |||||||||
TGATGTAAGAGGCAATAATCTGACTGGAACAATCCCTGATAGCATCGGTAACTGTACAAGCTTTGAAATCCTgtatgtt---tcctttgga--tgactctttgagtatt-----tatatttctatatctagtaaactt---ttgattaaatgtttattgattgg--gaatttcag

upper sequence: GLYMA20G29010.1 (Glycine max), 5'ss of exon 6
lower sequence: EFJ23934 (Selaginella moellendorffii), 5'ss of exon 8
--ATGTGAGAGGCAATAATTTGACTGGTACCGTACCTGACAGCATTGGGAACTGCACAAGTTTTGAAATCTTGTATGTTGTGTATTTGGTATTTGgt-atttggtatgttaaat-atttgatttgatttccaataattttgtcctcattgtcactttcttgtttcattgaatttcag
  ||||| |  |||| ||| |  |||| |   | ||||| | ||| || ||||||||||||||||||||||||||||| |  ||     | |    | ||| ||| |  | | | |  |||  ||  ||    |                                           
TGATGTGCGCAGCAACAATATCTCTGGGATTATTCCTGATAACATAGGCAACTGCACAAGTTTTGAAATCTTgtatgtggattacaatctttacattcattcggtgttctcattcacgtgacatgggttttggtgcag---------------------------------------

upper sequence: GLYMA20G29010.1 (Glycine max), 5'ss of exon 6
lower sequence: EFJ21557 (Selaginella moellendorffii), 5'ss of exon 8
--ATGTGAGAGGCAATAATTTGACTGGTACCGTACCTGACAGCATTGGGAACTGCACAAGTTTTGAAATCTTGTATGTTGTGTATTTGGTATTTGgtatttggtatgttaaat-atttgatttgatttccaataattttgtcctcattgtcactttcttgtttcattgaatttcag
  ||||| |  |||| ||| |  |||| |   | ||||| | ||| || || ||||||||||||||||||||||||||  |    ||   |||    ||| ||  |  | | | |  |||  ||  ||    |                                           
TGATGTGCGCAGCAACAATATCTCTGGGATTATTCCTGATAACATAGGCAATTGCACAAGTTTTGAAATCTTgtatgtaat---ctttacattc---attcggcgttctcattcacgtgacatgggttttggtgcag---------------------------------------