Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   		15  
 5'  3'   		16  
 5'  3'   		17  
 5'  3'   		18  
 5'  3'   		19  
 5'  3'   		20  
 5'  3'   
21  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagtatcccaactcaagcacaatgcggtttctcttcgtttccttcttgtgtccttacgtcagttttgacctttgttttttcttttgttttccttgatttttcagTGATGTGAGAGGCAATAATTTGACTGGTACCGTACCTGACAGCATTGGGAACTGCACAAGTTTTGAAATCTTGTATGTTGTGTATTTGGTATTTGGTATT

Basic information

species Glycine max
transcript GLYMA20G29010.1
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA20G29010.1 (Glycine max), 3'ss of exon 5
lower sequence: Vv16s0022g02030.t01 (Vitis vinifera), 3'ss of exon 7
gtgagtatcccaactcaagcacaatgcggtttctcttcgtttccttcttgtgtccttacgtcagttttgacctttgttttttcttttgttttccttgatttttcagTGATGTGAGAGGCAATAATTTGACTGGTACCGTACCTGACAGCATTGGGAACTGCACAAGTTTTGAAATCTTGTATGTTGTGTATTTGGTATTTGGTATT
||||||      |||        ||||  | | |       |  |||   ||    |  ||   || |||   |      ||  ||||||| | |||  ||||||||||||| |||||||||||| ||||||| ||  | ||||| ||||| || ||||| ||||| ||||||||| |                            
gtgagtgatattacttccttgttatgctatctttgcattggtttttcaaatggatgtttgtttattgtgaaact---gcatttatttgtttacattg--ttttcagTGATGTAAGAGGCAATAATCTGACTGGAACAATCCCTGATAGCATCGGTAACTGTACAAGCTTTGAAATCCT----------------------------


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtccttacgtcagttttgacctttgttttttcttttgttttccttgatttttcagTGATGTGAGAGGCAATAATTTGACTGGTACCGTACCTGACAGCATTGGGAACTGCACAAGTTTTGAAATCTTGTATGTTGTGTATTTGGTATTTGGTATT
                   cctttgttttttcttt  CT-rich tract
                         ttttttcttttgtttt  TA-rich tract