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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTATCCTCATTGCCTCTATTTTCTTGAGCTGCTTCAGAATGCAAATTTTCGCAACGCAATGGCACATCCAACCAATAAGgtaaatggcagtatctttttgctcctgtctgaagtaacggcattctctatttcttttataatagattctcctttaatagcaaatttgcttgtaaatgtat...

Basic information

species Glycine max
transcript GLYMA20G28990.1
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA20G28990.1 (Glycine max), 5'ss of exon 4
lower sequence: GRMZM2G139683_T03 (Zea mays), 5'ss of exon 4
GTATCCTCATTGCCTCTATTTTCTTGAGCTGCTTCAGAATGCAAATTTTCGCAACGCAATGGCACATCCAACCAATAAGgtaaatggcagtatctttttgctcctgtctgaagtaacggcattctctatttcttttataatagattctcctttaatagcaaatttgcttgtaaa-tgtat----
|||||| || ||||| |  ||||||||||| || || ||||| ||||| || || ||||||||||||||||| || ||||| |      |   ||     | |  ||    | |    |||   | | |  ||||| |     |   || |  | |  ||    | |||  |||   ||     
GTATCCACACTGCCTTTTCTTTCTTGAGCTTCTCCAAAATGCCAATTTCCGAAATGCAATGGCACATCCAACAAACAAGgtgatcttttg-gcctagaatcacacgttcacacttg-agcaccgtttttagcttttgttt---accgtcttgcagtgtcatcccttctttcaaaacctagctga
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|5342374|gb|AI794658.1|AI794658
EST:     TGCTTCAGAATGCAAATTTTCGCAACGCAATGGCACATCCAACCAATAAG                         GAACTGGCACACAGACAGCAGTTCTACTTCTGGAAGAACTATAGGAACAAT
genomic: TGCTTCAGAATGCAAATTTTCGCAACGCAATGGCACATCCAACCAATAAGgtaaatggca ... tgtattttagGAACTGGCACACAGACAGCAATTCTACTTCTGGAAGAACTATAGGAACAAT
EST: gi|19347522|gb|BM892402.1|BM892402
EST:     TGCTTCAGAATGCAAATTTTCGCAACGCAATGGCACATCCAACCAATAAG                         GAACTGGCACACAGACAGCAATTCTACTTCTGGAAGAACTATAGGAACAAT
genomic: TGCTTCAGAATGCAAATTTTCGCAACGCAATGGCACATCCAACCAATAAGgtaaatggca ... tgtattttagGAACTGGCACACAGACAGCAATTCTACTTCTGGAAGAACTATAGGAACAAT