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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATTTGGCTCAGAATCGATACTTTGAGGATGAAGCATTCATTGGATACTTAAAGTATCTTCAATATTGGCAACGCCCTGAATATATTAAATTTATTATgtaagccttttcttcaaattaggtattatgtaatacaattatactccggcactgagttatttcaattaggttaaaaggattaaaaaatttagactaggga...

Basic information

species Glycine max
transcript GLYMA20G28990.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA20G28990.1 (Glycine max), 5'ss of exon 3
lower sequence: AT5G19910.1 (Arabidopsis thaliana), 5'ss of exon 3
ATTTGGCTCAGAATCGATACTTTGAGGATGAAGCATTCATTGGATACTTAAAGTATCTTCAATATTGGCAACGCCCTGAATATATTAAATTTATTATgtaagccttttcttcaaattaggtattatgtaatacaattatactccggcactgagttatttcaattaggttaaaaggattaaaaaatttagactaggga
|  |||| |||||||| || ||||| ||||||||||| ||||||||||| |||||||||||||| ||||| || || || || || || || ||||||||||        ||  ||    | |  |||| | |   || | ||  |    |  ||   | |  ||  ||    || ||   |  ||     ||  | 
ACCTGGCACAGAATCGGTATTTTGAAGATGAAGCATTTATTGGATACTTGAAGTATCTTCAATACTGGCAGCGACCAGAGTACATCAAGTTCATTATgtaagttggaatatcttatggaat-tggtgtagt-cttgtagagtcttgtgaaggtttggataatatatctt---tggtttcctatgttcttgttacag-

upper sequence: GLYMA20G28990.1 (Glycine max), 5'ss of exon 3
lower sequence: Vv16s0039g02760.t01 (Vitis vinifera), 5'ss of exon 4
ATTTGGCTCAGAATCGATACTTTGAGGATGAAGCATTCATTGGATACTTAAAGTATCTTCAATATTGGCAACGCCCTGAATATATTAAATTTATTATgtaagccttttcttcaaattaggtattatgtaatacaattatactccggcactgagttatttcaattaggttaaaaggattaaaaaatttagactaggga-----------------------------------------------------------------------------------
|||||||||| ||||| || ||||| |||||||| |||||||| ||||| || || ||||||||||||||||  || || || || ||||| || ||||||||   |   | | | |     | || |||||   |||| | |  |      || ||  ||     |  |  |   ||     |  |   ||    |                                                                                   
ATTTGGCTCAAAATCGCTATTTTGAAGATGAAGCTTTCATTGGCTACTTGAAATACCTTCAATATTGGCAACAACCAGAGTACATAAAATTCATAATgtaagcaactctcttagagtcatgctcatctaataatgttatgcccatgt-taaggtcatagcagcctaggaatcattgttctcctaccttctcttcttaccaaagcgtgtaacctttctgtgctttattttttatttttcattttcaagaatttgtattctcatggtgtggaatgattccag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|5342374|gb|AI794658.1|AI794658
EST:     TTAAAGTATCTTCAATATTGGCAACGCCCTGAATATATTAAATTTATTAT                         GTATCCTCATTGCCTCTATTTTCTTGAGCTGCTTCAGAATGCAAATTTTCG
genomic: TTAAAGTATCTTCAATATTGGCAACGCCCTGAATATATTAAATTTATTATgtaagccttt ... tgaatgctagGTATCCTCATTGCCTCTATTTTCTTGAGCTGCTTCAGAATGCAAATTTTCG
EST: gi|19347522|gb|BM892402.1|BM892402
EST:     TTAAAGTATCTTCAATATTGGCAACGCCCTGAATATATTAAATTTATTAT                         GTATCCTCATTGCCTCTATTTTCTTGAGCTGCTTCAGAATGCAAATTTTCG
genomic: TTAAAGTATCTTCAATATTGGCAACGCCCTGAATATATTAAATTTATTATgtaagccttt ... tgaatgctagGTATCCTCATTGCCTCTATTTTCTTGAGCTGCTTCAGAATGCAAATTTTCG