1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...tcttttacttcttttctgcccacccccttatttcatttgatgttttgctttactctggctgagttgctatcctaatttagtcattttctatgaatgctagGTATCCTCATTGCCTCTATTTTCTTGAGCTGCTTCAGAATGCAAATTTTCGCAACGCAATGGCACATCCAACCAATAAG
species | Glycine max |
transcript | GLYMA20G28990.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: TTAAAGTATCTTCAATATTGGCAACGCCCTGAATATATTAAATTTATTAT GTATCCTCATTGCCTCTATTTTCTTGAGCTGCTTCAGAATGCAAATTTTCGEST: gi|19347522|gb|BM892402.1|BM892402
genomic: TTAAAGTATCTTCAATATTGGCAACGCCCTGAATATATTAAATTTATTATgtaagccttt ... tgaatgctagGTATCCTCATTGCCTCTATTTTCTTGAGCTGCTTCAGAATGCAAATTTTCG
EST: TTAAAGTATCTTCAATATTGGCAACGCCCTGAATATATTAAATTTATTAT GTATCCTCATTGCCTCTATTTTCTTGAGCTGCTTCAGAATGCAAATTTTCG
genomic: TTAAAGTATCTTCAATATTGGCAACGCCCTGAATATATTAAATTTATTATgtaagccttt ... tgaatgctagGTATCCTCATTGCCTCTATTTTCTTGAGCTGCTTCAGAATGCAAATTTTCG
tgctttactctggctgagttgctatcctaatttagtcattttctatgaatgctagGTATCCTCATTGCCTCTATTTTCTTGAGCTGCTTCAGAATGCAAATTTTCGCAACGCAATGGCACATCCAACCAATAAG
tcctaat putative branch site (score: 2)
ttttctat putative PPT
taatttagtcatttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tcttttacttcttttctgcccacccccttatttcatttgatgttttgctttactctggctgagttgctatcctaatttagtcattttctatgaatgctagGTATCCTCATTGCCTCTATTTTCTTGAGCTGCTTCAGAATGCAAATTTTCGCAACGCAATGGCACATCCAACCAATAAG
- - - - - - -ttctgcc
- - - - - - - - - - caccccc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgctatc