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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgtgctgtcattatctctgtccttttttcctttttttttttatatattgtgggaagaggaatttttgctgtaaattcttgctatctcatcgcaggttgcgggttctgatagatcctccattattcttcccctgtcagGGCTCAAGCAGTTTCATGAGATTGTTGGTCACTTTGTCGAAATCACAAAGGACCGAATTGAGGGAATGGCGGTTGCTAATGTTCGCACAATTGATCCCCC

Basic information

species Glycine max
transcript GLYMA20G03020.2
intron # 4
splice site 3'
intron type U2


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atctcatcgcaggttgcgggttctgatagatcctccattattcttcccctgtcagGGCTCAAGCAGTTTCATGAGATTGTTGGTCACTTTGTCGAAATCACAAAGGACCGAATTGAGGGAATGGCGGTTGCTAATGTTCGCACAATTGATCCCCC
                    ttctgat  putative branch site (score: 3)
                              tcctccattattcttc  putative PPT
                                    attattctt  TA-rich tract