Sequence
atgc intronic sequence ATGC exonic sequenceTGTTCCGGCTGGAAGCTCCAGGGATGAAGGATGGGCAGCATTCAGGAACATTTTGGCAGAGATCAATGAAGCCTCAAGGCTTTTCATTCTGCCCAATCAGgtttccttcttgtgaaacagacatttttcttcctgcttagccacaagaatagtcaaagttgttgcttttttttattcatcttatttgcttgtttgcattccgcaatag
Basic information
species | Glycine max |
transcript | GLYMA20G03020.2 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA20G03020.1 (Glycine max), 5'ss of exon 3
lower sequence: AT2G32080.2 (Arabidopsis thaliana), 5'ss of exon 3
TGTTCCGGCTGGAAGCTCCAGGGATGAAGGATGGGCAGCATTCAGGAACATTTTGGCAGAGATCAATGAAGCCTCAAGGCTTTTCATTCTGCCCAATCAGgtttccttcttgtgaaacagacatttttcttcctgcttagccacaagaatagtcaaagttgttgcttttttttattcatcttatttgcttgtttgcattccgcaatag
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TGTTCCAGCTGGAAGCTCTCCTGATGAAGGATGGGCAGCTTTCAGGAATATATTGGCTGAGATACATGAAGCATCAGGACTTTTTGTGATGCCAAATCAGgtggtattatcgt----------ctcctttgattgaaaagcctttaactaagttct--ctggtctcattgtatcttcgttttggaaacag------------------
upper sequence: GLYMA20G03020.1 (Glycine max), 5'ss of exon 3
lower sequence: AT2G32080.1 (Arabidopsis thaliana), 5'ss of exon 3
TGTTCCGGCTGGAAGCTCCAGGGATGAAGGATGGGCAGCATTCAGGAACATTTTGGCAGAGATCAATGAAGCCTCAAGGCTTTTCATTCTGCCCAATCAGgtttccttcttgtgaaacagacatttttcttcctgcttagccacaagaatagtcaaagttgttgcttttttttattcatcttatttgcttgtttgcattccgcaatag
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---TCCAGCTGGAAGCTCTCCTGATGAAGGATGGGCAGCTTTCAGGAATATATTGGCTGAGATACATGAAGCATCAGGACTTTTTGTGATGCCAAATCAGGTGgtattatcgt----------ctcctttgattgaaaagcctttaactaagttct--ctggtctcattgtatcttcgttttggaaacag------------------
upper sequence: GLYMA20G03020.1 (Glycine max), 5'ss of exon 3
lower sequence: Vv06s0004g00040.t01 (Vitis vinifera), 5'ss of exon 2
TGTTCCGGCTGGAAGCTCCAGGGATGAAGGATGGGCAGCATTCAGGAACATTTTGGCAGAGATCAATGAAGCCTCAAGGCTTTTCATTCTGCCCAATCAGgtttccttcttgtgaaacagacatttttcttcctgcttagccacaagaatagtcaaagttgttgcttttttttattcatcttatttgct--tgtttgcattccgcaatag
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TGTTCCTGCAGGAAGCACTCGAGATGAAGGGTGGGCAGCATTCAGGAACATCTTGGCAGAGATTAATGAAGCATCGAGGCTTTTCATCTTGCCCAATCAGgtgtccttgtgat----------ccctcttccctgcttccctgtaaaagca-ttacttttcttcttttagtggggtctcattgcttcttgttttttgggtgtgaaaacagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|14991853|gb|BI317526.1|BI317526EST: TTTTGGCAGAGATCAATGAAGCCTCAAGGCTTTTCATTCTGCCCAATCAG CAAAATTCTGAATCCTCAGAGCATCTTGTTTGGACTTTCGGATGATGTTGG
genomic: TTTTGGCAGAGATCAATGAAGCCTCAAGGCTTTTCATTCTGCCCAATCAGgtttccttct ... tccgcaatagCAAAATTCTGAATCCTCAGAGCATCTTGTT-GGACTTTCGGATGATGTTGG
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
TGTTCCGGCTGGAAGCTCCAGGGATGAAGGATGGGCAGCATTCAGGAACATTTTGGCAGAGATCAATGAAGCCTCAAGGCTTTTCATTCTGCCCAATCAGgtttccttcttgtgaaacagacatttttcttcctgcttagccacaagaatagtcaaagttgttgcttttttttattcatcttatttgcttgtttgcattccgcaatag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGATCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC