Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtttccttcttgtgaaacagacatttttcttcctgcttagccacaagaatagtcaaagttgttgcttttttttattcatcttatttgcttgtttgcattccgcaatagCAAAATTCTGAATCCTCAGAGCATCTTGTTGGACTTTCGGATGATGTTGGTGCTGGCTTCATATCTGGTCATAGTACTCAACCTGCCACTTCTTCTGAGT

Basic information

species Glycine max
transcript GLYMA20G03020.2
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA20G03020.1 (Glycine max), 3'ss of exon 3
lower sequence: Vv06s0004g00040.t01 (Vitis vinifera), 3'ss of exon 2
gtttccttcttgtgaaacagacatttttcttcc-tgcttagccacaagaatagtcaaagttgttgcttttttttattcatcttatttgct--tgtttgcattccgcaatagCAAAATTCTGAATCCTCAGAGCATCTTGTTGGACTTTCGGATGATGTTGGTGCTGGCTTCATATCTGGTCATAGTACTCAACCTGCCACTTCTTCTGAGT
           |||     |  ||   |||||| |||||  |   || |  | | |   || ||  |||  |    ||   ||  ||  |  | ||||  |     || |||||| ||||||| | ||||| |  |||||||| ||||| |||||||| ||||||||||||||||| || || ||||||||||| ||| |  | |||||||
-----------gtgtccttgtgatccctcttccctgcttccctgtaaaagca-ttacttttcttcttttagtggggtctcattgcttcttgttttttgggtgtgaaaacagCAAAGTTCTGAACCTTCAGAACGGCTTGTTGGGCTTTCAGATGATGTGGGTGCTGGCTTCATATCAGGCCACAGTACTCAACCGGCCCCAGCATCTGAGT
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|14991853|gb|BI317526.1|BI317526
EST:     TTTTGGCAGAGATCAATGAAGCCTCAAGGCTTTTCATTCTGCCCAATCAG                         CAAAATTCTGAATCCTCAGAGCATCTTGTTTGGACTTTCGGATGATGTTGG
genomic: TTTTGGCAGAGATCAATGAAGCCTCAAGGCTTTTCATTCTGCCCAATCAGgtttccttct ... tccgcaatagCAAAATTCTGAATCCTCAGAGCATCTTGTT-GGACTTTCGGATGATGTTGG






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

caaagttgttgcttttttttattcatcttatttgcttgtttgcattccgcaatagCAAAATTCTGAATCCTCAGAGCATCTTGTTGGACTTTCGGATGATGTTGGTGCTGGCTTCATATCTGGTCATAGTACTCAACCTGCCACTTCTTCTGAGT
            ttttttttattcatct  TA-rich tract