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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgtgctgtcattatctctgtccttttttcctttttttttttatatattgtgggaagaggaatttttgctgtaaattcttgctatctcatcgcagGTTGCGGGTTCTGATAGATCCTCCATTATTCTTCCCCTGTCAGGGCTCAAGCAGTTTCATGAGATTGTTGGTCACTTTGTCGAAATCACAAAGGACCGAA

Basic information

species Glycine max
transcript GLYMA20G03020.1
intron # 4
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|254344654|gb|GR851244.1|GR851244
EST:     TCTTTGATCTTGGGAGCAATAATAGGGGTCATTTCTTAAGAATATCTGAG                         GTTGCGGGTTCTGATAGATCCTCCATTATTCTTCCCCTGTCAGG-CTCAAG
genomic: TCTTTGATCTTGGGAGCAATAATAGGGGTCATTTCTTAAGAATATCTGAGgtgtgctgtc ... ctcatcgcagGTTGCGGGTTCTGATAGATCCTCCATTATTCTTCCCCTGTCAGGGCTCAAG
EST: gi|7234734|gb|AW570068.1|AW570068
EST:     TCTTTGATCTTGGGAGCAATAATAGGGGTCATTTCTTAAGAATATCTGAG                         GTTGCGGGTTCTGATAGATCCTCCATTATTCTTCCCCTGTCAGGGCTCAAG
genomic: TCTTTGATCTTGGGAGCAATAATAGGGGTCATTTCTTAAGAATATCTGAGgtgtgctgtc ... ctcatcgcagGTTGCGGGTTCTGATAGATCCTCCATTATTCTTCCCCTGTCAGGGCTCAAG
EST: gi|6070564|gb|AW099951.1|AW099951
EST:     CTTTGATCTTGGGAGCCATAATAGGGGTCATTTTCTTAAGACTATCTGAG                         GTTGCGGGTTCTGATAGATCCTCCATTATTCTTCCCCTGTCAGGGCTCAAG
genomic: CTTTGATCTTGGGAGCAATAATAGGGGTCATTT-CTTAAGAATATCTGAGgtgtgctgtc ... ctcatcgcagGTTGCGGGTTCTGATAGATCCTCCATTATTCTTCCCCTGTCAGGGCTCAAG
EST: gi|254325803|gb|GR838684.1|GR838684
EST:     TCTTTGATCTTGGGAGCAATAATAGGGGTCATTTCTTAAGAATATCTGAG                         -TTGCGGGTTCTGATAGATCCTCCATTATTCTTCCCCTGTCAGG-CTCAAG
genomic: TCTTTGATCTTGGGAGCAATAATAGGGGTCATTTCTTAAGAATATCTGAGgtgtgctgtc ... ctcatcgcagGTTGCGGGTTCTGATAGATCCTCCATTATTCTTCCCCTGTCAGGGCTCAAG
EST: gi|15664854|gb|BI702225.1|BI702225
EST:     TCTTTGATCTTGGGAGCAATAATAGGGGTCATTTCTTAAGAATATCTGAG                         GTTGCGGGTTCTGATAGATCCTCCATTATTCTTCCCCTGTCAGGGCTCAAG
genomic: TCTTTGATCTTGGGAGCAATAATAGGGGTCATTTCTTAAGAATATCTGAGgtgtgctgtc ... ctcatcgcagGTTGCGGGTTCTGATAGATCCTCCATTATTCTTCCCCTGTCAGGGCTCAAG
EST: gi|254344653|gb|GR851243.1|GR851243
EST:     TCTTTGATCTTGGGAGCAATAATAGGGGTCATTTCTTAAGAATATCTGAG                         GTTGCGGGTTCTGATAGATCCTCCATTATTCTTCCCCTGTCAGGGCTCAAG
genomic: TCTTTGATCTTGGGAGCAATAATAGGGGTCATTTCTTAAGAATATCTGAGgtgtgctgtc ... ctcatcgcagGTTGCGGGTTCTGATAGATCCTCCATTATTCTTCCCCTGTCAGGGCTCAAG
EST: gi|22929538|gb|BU546677.1|BU546677
EST:     TCTTTGATCTTGGGAGCAATAATAGGGGTCATTTCTTAAGAATATCTGAG                         GTTGCGGGTTCTGATAGATCCTCCATTATTCTTCCCCTGTCAGGGCTCAAG
genomic: TCTTTGATCTTGGGAGCAATAATAGGGGTCATTTCTTAAGAATATCTGAGgtgtgctgtc ... ctcatcgcagGTTGCGGGTTCTGATAGATCCTCCATTATTCTTCCCCTGTCAGGGCTCAAG
EST: gi|9203424|gb|BE329577.1|BE329577
EST:     TCTTTGATCTTGGGAGCAATAATAGGGGTCATTTCTTAAGAATATCTGAG                         GTTGCGGGTTCTGATAGATCCTCCATTATTCTTCCCCTGTCAGGGCTCAAG
genomic: TCTTTGATCTTGGGAGCAATAATAGGGGTCATTTCTTAAGAATATCTGAGgtgtgctgtc ... ctcatcgcagGTTGCGGGTTCTGATAGATCCTCCATTATTCTTCCCCTGTCAGGGCTCAAG
EST: gi|192304816|gb|FG996032.1|FG996032
EST:     TCTTTGATCTTGGGAGCAATAATAGGGGTCATTTCTTAAGAATATCTGAG                         GTTGCGGGTTCTGATAGATCCTCCATTATTCTTCCCCTGTCAGGGCTCAAG
genomic: TCTTTGATCTTGGGAGCAATAATAGGGGTCATTTCTTAAGAATATCTGAGgtgtgctgtc ... ctcatcgcagGTTGCGGGTTCTGATAGATCCTCCATTATTCTTCCCCTGTCAGGGCTCAAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttatatattgtgggaagaggaatttttgctgtaaattcttgctatctcatcgcagGTTGCGGGTTCTGATAGATCCTCCATTATTCTTCCCCTGTCAGGGCTCAAGCAGTTTCATGAGATTGTTGGTCACTTTGTCGAAATCACAAAGGACCGAA
                                         ctatctc  CT-rich tract
                               taaattctt  TA-rich tract