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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtttccttcttgtgaaacagacatttttcttcctgcttagccacaagaatagtcaaagttgttgcttttttttattcatcttatttgcttgtttgcattccgcaatagCAAAATTCTGAATCCTCAGAGCATCTTGTTGGACTTTCGGATGATGTTGGTGCTGGCTTCATATCTGGTCATAGTACTCAACCTGCCACTTCTTCTGAGT

Basic information

species Glycine max
transcript GLYMA20G03020.1
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA20G03020.1 (Glycine max), 3'ss of exon 3
lower sequence: Vv06s0004g00040.t01 (Vitis vinifera), 3'ss of exon 2
gtttccttcttgtgaaacagacatttttcttcc-tgcttagccacaagaatagtcaaagttgttgcttttttttattcatcttatttgct--tgtttgcattccgcaatagCAAAATTCTGAATCCTCAGAGCATCTTGTTGGACTTTCGGATGATGTTGGTGCTGGCTTCATATCTGGTCATAGTACTCAACCTGCCACTTCTTCTGAGT
           |||     |  ||   |||||| |||||  |   || |  | | |   || ||  |||  |    ||   ||  ||  |  | ||||  |     || |||||| ||||||| | ||||| |  |||||||| ||||| |||||||| ||||||||||||||||| || || ||||||||||| ||| |  | |||||||
-----------gtgtccttgtgatccctcttccctgcttccctgtaaaagca-ttacttttcttcttttagtggggtctcattgcttcttgttttttgggtgtgaaaacagCAAAGTTCTGAACCTTCAGAACGGCTTGTTGGGCTTTCAGATGATGTGGGTGCTGGCTTCATATCAGGCCACAGTACTCAACCGGCCCCAGCATCTGAGT
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|254344654|gb|GR851244.1|GR851244
EST:     TTTTGGCAGAGATCAATGAAGCCTCAAGGCTTTTCATTCTGCCCAATCAG                         CAAAATTCTGAATCCTCAGAGCATCTTGTTGGACTTTCGGATGATGTTGGT
genomic: TTTTGGCAGAGATCAATGAAGCCTCAAGGCTTTTCATTCTGCCCAATCAGgtttccttct ... tccgcaatagCAAAATTCTGAATCCTCAGAGCATCTTGTTGGACTTTCGGATGATGTTGGT
EST: gi|254325803|gb|GR838684.1|GR838684
EST:     TTTTGGCAGAGATCAATGAAGCCTCAAGGCTTTTCATTCTGCCCAATCAG                         CAAAATTCTGAATCCTCAGAGCATCTTGTTGGACTTTCGGATGATGTTGGT
genomic: TTTTGGCAGAGATCAATGAAGCCTCAAGGCTTTTCATTCTGCCCAATCAGgtttccttct ... tccgcaatagCAAAATTCTGAATCCTCAGAGCATCTTGTTGGACTTTCGGATGATGTTGGT
EST: gi|192304816|gb|FG996032.1|FG996032
EST:     ATGAAGCCTCAAGGCTTTTCATTCTGCCCAATCAG                         CAAAATTCTGAATCCTCAGAGCATCTTGTTGGACTTTCGGATGATGTTGGT
genomic: ATGAAGCCTCAAGGCTTTTCATTCTGCCCAATCAGgtttccttct ... tccgcaatagCAAAATTCTGAATCCTCAGAGCATCTTGTTGGACTTTCGGATGATGTTGGT
EST: gi|14991853|gb|BI317526.1|BI317526
EST:     TTTTGGCAGAGATCAATGAAGCCTCAAGGCTTTTCATTCTGCCCAATCAG                         CAAAATTCTGAATCCTCAGAGCATCTTGTTTGGACTTTCGGATGATGTTGG
genomic: TTTTGGCAGAGATCAATGAAGCCTCAAGGCTTTTCATTCTGCCCAATCAGgtttccttct ... tccgcaatagCAAAATTCTGAATCCTCAGAGCATCTTGTT-GGACTTTCGGATGATGTTGG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

caaagttgttgcttttttttattcatcttatttgcttgtttgcattccgcaatagCAAAATTCTGAATCCTCAGAGCATCTTGTTGGACTTTCGGATGATGTTGGTGCTGGCTTCATATCTGGTCATAGTACTCAACCTGCCACTTCTTCTGAGT
            ttttttttattcatct  TA-rich tract