1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
TGTTCCGGCTGGAAGCTCCAGGGATGAAGGATGGGCAGCATTCAGGAACATTTTGGCAGAGATCAATGAAGCCTCAAGGCTTTTCATTCTGCCCAATCAGgtttccttcttgtgaaacagacatttttcttcctgcttagccacaagaatagtcaaagttgttgcttttttttattcatcttatttgcttgtttgcattccgcaatag
species | Glycine max |
transcript | GLYMA20G03020.1 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: TTTTGGCAGAGATCAATGAAGCCTCAAGGCTTTTCATTCTGCCCAATCAG CAAAATTCTGAATCCTCAGAGCATCTTGTTGGACTTTCGGATGATGTTGGTEST: gi|254325803|gb|GR838684.1|GR838684
genomic: TTTTGGCAGAGATCAATGAAGCCTCAAGGCTTTTCATTCTGCCCAATCAGgtttccttct ... tccgcaatagCAAAATTCTGAATCCTCAGAGCATCTTGTTGGACTTTCGGATGATGTTGGT
EST: TTTTGGCAGAGATCAATGAAGCCTCAAGGCTTTTCATTCTGCCCAATCAG CAAAATTCTGAATCCTCAGAGCATCTTGTTGGACTTTCGGATGATGTTGGTEST: gi|192304816|gb|FG996032.1|FG996032
genomic: TTTTGGCAGAGATCAATGAAGCCTCAAGGCTTTTCATTCTGCCCAATCAGgtttccttct ... tccgcaatagCAAAATTCTGAATCCTCAGAGCATCTTGTTGGACTTTCGGATGATGTTGGT
EST: ATGAAGCCTCAAGGCTTTTCATTCTGCCCAATCAG CAAAATTCTGAATCCTCAGAGCATCTTGTTGGACTTTCGGATGATGTTGGTEST: gi|14991853|gb|BI317526.1|BI317526
genomic: ATGAAGCCTCAAGGCTTTTCATTCTGCCCAATCAGgtttccttct ... tccgcaatagCAAAATTCTGAATCCTCAGAGCATCTTGTTGGACTTTCGGATGATGTTGGT
EST: TTTTGGCAGAGATCAATGAAGCCTCAAGGCTTTTCATTCTGCCCAATCAG CAAAATTCTGAATCCTCAGAGCATCTTGTTTGGACTTTCGGATGATGTTGG
genomic: TTTTGGCAGAGATCAATGAAGCCTCAAGGCTTTTCATTCTGCCCAATCAGgtttccttct ... tccgcaatagCAAAATTCTGAATCCTCAGAGCATCTTGTT-GGACTTTCGGATGATGTTGG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TGTTCCGGCTGGAAGCTCCAGGGATGAAGGATGGGCAGCATTCAGGAACATTTTGGCAGAGATCAATGAAGCCTCAAGGCTTTTCATTCTGCCCAATCAGgtttccttcttgtgaaacagacatttttcttcctgcttagccacaagaatagtcaaagttgttgcttttttttattcatcttatttgcttgtttgcattccgcaatag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGATCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC