1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...gatgataaaattttaatttcctcatgaaaatcacaagtatgcaagtacatgtacatgtaagtaatattaccagccaaattttttggcacaagcttttcagGCAGAACGGCTGCGCCATAATTTCAAAGAATTTATTGATCAATATGGTGAAAGTGATTTTCCAATTAAAGAAATGGTTGAGAAGCTAATGACAAACACAG
species | Glycine max |
transcript | GLYMA20G02900.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: CTGGAATTCACGTTTTGACTAATGCAGCCCTCGACGCTCTATGGCCAAAG GCAGAACGGCTGCGCCATAATTTCAAAGAATTTATTGGTCAATATGGTGAAEST: gi|298165614|gb|HO011663.1|HO011663
genomic: CTGGAATTCACGTTTTGACTAATGCAGCCCTCGACGCTCCATGGCCAAAGgtaacaacaa ... agcttttcagGCAGAACGGCTGCGCCATAATTTCAAAGAATTTATTGATCAATATGGTGAA
EST: CTGGAATTCACGTTTTGACTAATGCAGCCCTCGACGCTCCATGGCCAAAG GCAGAACGGCTGCGCCATAATTTCAAAG
genomic: CTGGAATTCACGTTTTGACTAATGCAGCCCTCGACGCTCCATGGCCAAAGgtaacaacaa ... agcttttcagGCAGAACGGCTGCGCCATAATTTCAAAG
tacatgtacatgtaagtaatattaccagccaaattttttggcacaagcttttcagGCAGAACGGCTGCGCCATAATTTCAAAGAATTTATTGATCAATATGGTGAAAGTGATTTTCCAATTAAAGAAATGGTTGAGAAGCTAATGACAAACACAG
cttttc CT-rich tract
atgtaagtaatatta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gatgataaaattttaatttcctcatgaaaatcacaagtatgcaagtacatgtacatgtaagtaatattaccagccaaattttttggcacaagcttttcagGCAGAACGGCTGCGCCATAATTTCAAAGAATTTATTGATCAATATGGTGAAAGTGATTTTCCAATTAAAGAAATGGTTGAGAAGCTAATGACAAACACAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - catgaaa
- - - - - - - - - - - - - - - - - - gtatgca
- - - - - - - - - - - - - - - - - - - - - - - -catgtac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ccagcca