1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...taaaccaataaaaaatatatgttgaaaagaatatgttaaaaaatataattctaacatttatcgtgccaagaataatgtatatatgaatacaacgcaacagGGCAATAAGAGTCCCGAGGAGTTTGCGGAGCAAGTTGTGAAAGAGGCAGATGAGTATAATGGCTTTAACCTTGTATTAGCTGATATTTGCACCTCCAGCA
species | Glycine max |
transcript | GLYMA20G02900.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: TGCTTTCGAATCCCAAGACCAGAGGGGACTTGCCCCTTCGTTTTCCTCAG GGCAATAAGAGTCCCGAGGAGTTTGCGGAGCAAGTTGTGAAAGAGGCAGATEST: gi|298165614|gb|HO011663.1|HO011663
genomic: TGCTTTCGAATCCCAAGACCAGAGGGGACTTGCCCCTTCGTTTTCTTCAGgtaatcacgc ... aacgcaacagGGCAATAAGAGTCCCGAGGAGTTTGCGGAGCAAGTTGTGAAAGAGGCAGAT
EST: TGCTTTCGAATCCCAAGACCAGAGGGGACTTGCCCCTTCGTTCTCTTCAG GGCAACAAGAGTCCCGAGGAGTTTGCGGAGCAAGTTGTGAAAGAGGCAGAT
genomic: TGCTTTCGAATCCCAAGACCAGAGGGGACTTGCCCCTTCGTTTTCTTCAGgtaatcacgc ... aacgcaacagGGCAATAAGAGTCCCGAGGAGTTTGCGGAGCAAGTTGTGAAAGAGGCAGAT
taattctaacatttatcgtgccaagaataatgtatatatgaatacaacgcaacagGGCAATAAGAGTCCCGAGGAGTTTGCGGAGCAAGTTGTGAAAGAGGCAGATGAGTATAATGGCTTTAACCTTGTATTAGCTGATATTTGCACCTCCAGCA
ttctaac putative branch site (score: 1)
aagaataatgtatata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| taaaccaataaaaaatatatgttgaaaagaatatgttaaaaaatataattctaacatttatcgtgccaagaataatgtatatatgaatacaacgcaacagGGCAATAAGAGTCCCGAGGAGTTTGCGGAGCAAGTTGTGAAAGAGGCAGATGAGTATAATGGCTTTAACCTTGTATTAGCTGATATTTGCACCTCCAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT
- - - - -aaaaaat
- - - - - - - - - - - - aaaagaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgccaag