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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGAATGTTCAACATCCATATAAACCTCTTATGGAAGCCATAAAGAAGTTTGTTGCCAAGAATGCCCTTGCACTAGTTGCGTGGAACTTTGTTAATGATGGgtatgatttggttgcaatttgtttgaatttaactgtcgatttatttttaaaatatatttgatcacacactggaaaaaagtggctttcag

Basic information

species Glycine max
transcript GLYMA20G02880.1
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA20G02880.1 (Glycine max), 5'ss of exon 4
lower sequence: AT5G45190.1 (Arabidopsis thaliana), 5'ss of exon 5
TGAATGTTCAACATCCATATAAACCTCTTATGGAAGCCATAAAGAAGTTT---GTTGCCAAGAATGCCCTTGCACTAGTTGCGTGGAACTTTGTTAATGATGGgtatgatttggttgcaatttgtt-tgaatttaactgtcgatttatttttaaaatatatttgatcacacactggaaaaaagtggctttcag
   ||||| | ||||| |||||||| ||  | ||||| |||||||| |||   |||||  ||||||| ||||| | |||||| ||||| ||||||||||||||||| | |   |    | ||  || | ||  |  |  |   | ||| |      ||| || |    || ||     ||||||||||| |||
---ATGTTTATCATCCTTATAAACCCCTGGTAGAAGCAATAAAGAAATTTAAGGTTGCACAGAATGCACTTGCCCAAGTTGCATGGAATTTTGTTAATGATGGgtacgttcaagaactatttccttctaaagcttccaataattctatgtgccttgtattttcgtcttcatac-aatgaaaagtggcttgcag

upper sequence: GLYMA20G02880.1 (Glycine max), 5'ss of exon 4
lower sequence: EFJ27727 (Selaginella moellendorffii), 5'ss of exon 4
TGAATGTTCAACATCCATATAAACCTCTTATGGAAGCCATAAAGAAGTTT---GTTGCCAAGAATGCCCTTGCACTAGTTGCGTGGAACTTTGTTAATGATGGgtatgatttggttgcaatttgtttgaatttaactgtcgattt-atttttaaaatatatttgatcaca-cactggaaaaaagtggctttcag--------------------
   | ||||| |||||||| | ||| ||  |||  |||||||| |||||    ||  |  |  |||| || || | |||||||||||||||||| ||||||||||| | | | |     |   ||  ||| || | | |||| |  | | ||  | |   | |  |  || ||||   |  |  |||   | |                     
---ACGTTCACCATCCATACAGACCGCTGGTGGCCGCCATAAAAAAGTTCAACGTCTCTCAACATGCGCTGGCTCAAGTTGCGTGGAACTTTGTCAATGATGGgtaagctctcgcac--accagtaggaacttcagtctcgactggagtgttggagtccgtgttgtttcatcactttgatgagatgggaatgaagcagtggaagggatgtgcag