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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATTCCCCATCAAGAAAAGATGGAATTGACTTGAAGAAAGAGACATATCTGCGCAAGTCATACTGCACATTCTTGCAGGATTTAGGCATGAGACTTAAAGTgtgagtttggtgctagcctgctgatattattataaatatttaattattactttctagattcacatacttgctgtgtttgggatagctctgagggatttta...

Basic information

species Glycine max
transcript GLYMA20G02880.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA20G02880.1 (Glycine max), 5'ss of exon 2
lower sequence: AC233979.1_FGT009 (Zea mays), 5'ss of exon 1
ATTCCCCATCAAGAAAAGATGGAATTGACTTGAAGAAAGAGACATATCTGCGCAAGTCATACTGCACATTCTTGCAGGATTTAGGCATGAGACTTAAAGTgtgagtttggtgctagcctgctgatattattataaatattta-attattactttctagattcacatacttgctgtgtttgggatagctctgagggatttta
||||||  || || | ||| || |||||  ||||||||||| | ||||| ||||||||||| ||||||||  |||||||||| || |||||||||||||||| ||| |  |  ||  |  |  ||  |||   || |||||  | |   | || ||  |   |||   |   |  |  ||  ||| |  |    | | || 
ATTCCCTTTCGAGGAGAGACGGCATTGATCTGAAGAAAGAGTCTTATCTTCGCAAGTCATATTGCACATTTCTGCAGGATTTGGGGATGAGACTTAAAGTgtaagtata-tattataccacaaattctatgtcaattatttttacttgcatttcctgaaaatacaacatccattcgcctgtaatatcattagctgttattt

upper sequence: GLYMA20G02880.1 (Glycine max), 5'ss of exon 2
lower sequence: GRMZM2G308570_T02 (Zea mays), 5'ss of exon 10
ATTCCCCATCAAGAAAAGATGGAATTGACTTGAAGAAAGAGACATATCTGCGCAAGTCATACTGCACATTCTTGCAGGATTTAGGCATGAGACTTAAAGTgtgagtttggtgctagcctgctgatattattataaatattta-attattactttctagattcacatacttgctgtgtttgggatagctctgagggatttta-
|||||  ||| || |  || || |||||  ||||||||||| | ||||| ||||||||||| ||||||||  |||||||||| || ||||| |||||||||| ||| |  |  ||  |  |  ||  |||   || |||||  | |  |  || ||  |   |||   |   |  |  ||  || | | |     | |||| 
ATTCCGTATCGAGGAGGGACGGCATTGATCTGAAGAAAGAGTCTTATCTTCGCAAGTCATATTGCACATTTCTGCAGGATTTGGGGATGAGGCTTAAAGTgtaagtatatt-ttataccacaaattctatgtcaattatttttacttctgtttcctgaaaatacaatatccattcgcctgc-attgttattttcaaatttat

upper sequence: GLYMA20G02880.1 (Glycine max), 5'ss of exon 2
lower sequence: AT4G19600.1 (Arabidopsis thaliana), 5'ss of exon 3
ATTCCCCATCAAGAAAAGATGGAATTGACTTGAAGAAAGAGACATATCTGCGCAAGTCATACTGCACATTCTTGCAGGATTTAGGCATGAGACTTAAAGTgtgagtttgg--tgctagcctgctgatatta-ttataaatatttaattattactttctagattcacatacttgctgtgtttgggatagctctgagggatttta
|||| || |||||    ||| | |||||||| ||||| || ||||| || |||||||||||||| ||||| ||||||||||||||||||||| | ||||||| ||| |    | ||  |||    || | |  | || | |||  ||| || | ||  |      | | |  |||  || | ||| |   ||      |  | 
ATTCACCTTCAAGGTTGGATAGTATTGACTTAAAGAAGGAAACATACCTCCGCAAGTCATACTGTACATTTTTGCAGGATTTAGGCATGAGATTAAAAGTgtaagtataaatttctgacctatatatttcagctttatacattgcatt-ttccatttgattacttcttgcgagcttggtctaggaca-tgctagtttctcct-

upper sequence: GLYMA20G02880.1 (Glycine max), 5'ss of exon 2
lower sequence: Vv00s0125g00270.t01 (Vitis vinifera), 5'ss of exon 1
ATTCCCCATCAAGAAAAGATGGAATTGACTTGAAGAAAGAGACATATCTGCGCAAGTCATACTGCACATTCTTGCAGGATTTAGGCATGAGACTTAAAGTgtgagtttggtgctagcctgctgatattattataaatatttaattattactttctagattcacatacttgctgtgtttggg-atagctctgagggatttta-
||||||||||||||| |||||| |||||||||| ||||||||||||| | || || ||||||||||| ||||||||||||||||||||||| |||||||||| |||    | | |   || || | |   | ||  | |    ||   |||   |  |  ||  |  ||   ||  ||||    | |  |   || ||  | 
ATTCCCCATCAAGAAGAGATGGCATTGACTTGAGGAAAGAGACATATTTCCGAAAATCATACTGCACTTTCTTGCAGGATTTAGGCATGAGGCTTAAAGTgtaagtcctatac-aaaatgttgttctggat-tatgtctcctttttgaactggttgtaggcaattctttcaggtaattggttgcatcatttcaggtttgcat

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|14258937|gb|BG881845.1|BG881845
EST:     CGCAAGTCATACTGCACATTCTTGCAGGATTTAGGCATGAGACTTAAAGT                         ACCATTGCAACGGTCTGTATGTTCCTTGCTGGGAAGGTTGAAGAGACTCCT
genomic: CGCAAGTCATACTGCACATTCTTGCAGGATTTAGGCATGAGACTTAAAGTgtgagtttgg ... ttttttgcagACCATTGCAACGGTCTGTATGTTCCTTGCTGGGAAGGTTGAAGAGACTCCT