1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...ttcttcccttgcatgttttacatggattacaatttccacatttctgttatattcatgataccacatacatgttattcatttatttttatatgtcttccagAATCTTTCTGCTACATGATGTTGAACAAATGATACAGAATTTATTCTGTGCACAGAAATTCTGGTACATATGACAGGACTTATGCCTGGAGAGTTGCCAC
species | Glycine max |
transcript | GLYMA20G02880.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: ACAGCTTGCATCCGATTCCGAGAAGAAGACGAGGCTTCTCTTTCGAATAC AATCTTTCTGCTACATGATGTTGAACAAATGATACAGAATTTATTCTGTGC
genomic: ACAGCTTGCATCCGATTCCGAGAAGAAGACGAGGCTTCTCTTTCGAATACgtaagtgcct ... tgtcttccagAATCTTTCTGCTACATGATGTTGAACAAATGATACAGAATTTATTCTGTGC
gttatattcatgataccacatacatgttattcatttatttttatatgtcttccagAATCTTTCTGCTACATGATGTTGAACAAATGATACAGAATTTATTCTGTGCACAGAAATTCTGGTACATATGACAGGACTTATGCCTGGAGAGTTGCCAC
tgtcttcc CT-rich tract
acatacatgttattca TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttcttcccttgcatgttttacatggattacaatttccacatttctgttatattcatgataccacatacatgttattcatttatttttatatgtcttccagAATCTTTCTGCTACATGATGTTGAACAAATGATACAGAATTTATTCTGTGCACAGAAATTCTGGTACATATGACAGGACTTATGCCTGGAGAGTTGCCAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- cttccct
- - - - - gcatgtt
- - - - - - - - - - catggat
- - - - - - - - - - - - - - - - -ttccaca
- - - - - - - - - - - - - - - - - - - - -ttctgtt
- - - - - - - - - - - - - - - - - - - - - - - - - -ttcatga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -cacatac