1 5' 3' | 2 5' 3' |
CGTCACGGTTCCCGAATCCCTCTCCTTCCTCGACACCGCCACCATCCCCATGTACTTCGCCGCCATCGGAATCGCACTCTTGGCCAAGCTCCTCATGACGgtacgccaccaccaccaccaccaccaccaccaccactcatcttattatcaatgtcatgattattattacagcgattcatctcgtcgcacaccacgtgttc...
species | Glycine max |
transcript | GLYMA20G02780.1 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: TGTACTTCGCCGCCATCGGAATCGCACTCTTGGCCAAGCTCCTCATGACG TACGATGATTCAAGGTCTCAAGAGCTGCTGGAGCGGAAGATAAAGAATGCCEST: gi|298169842|gb|HO018466.1|HO018466
genomic: TGTACTTCGCCGCCATCGGAATCGCACTCTTGGCCAAGCTCCTCATGACGgtacgccacc ... gtggtggcagTACGATGATTCAAGGTCTCAAGAGCTGCTGGAGCGGAAGATAAAGAATGCC
EST: TGTACTTCGCCGCCATCGGAATCGCACTCTTGGCCAAGCTCCTCATGACG TACGATGATTCAAGGTCTCAAGAGCTGCTGGAGCGGAAGATAAAGAATGCCEST: gi|51341870|gb|CO983187.1|CO983187
genomic: TGTACTTCGCCGCCATCGGAATCGCACTCTTGGCCAAGCTCCTCATGACGgtacgccacc ... gtggtggcagTACGATGATTCAAGGTCTCAAGAGCTGCTGGAGCGGAAGATAAAGAATGCC
EST: TGTACTTCGCCGCCATCGGAATCGCACTCTTGGCCAAGCTCCTCATGACG TACGATGATTCAAGGTCTCAAGAGCTGCTGGAGCGGAAGATAAAGAATGCC
genomic: TGTACTTCGCCGCCATCGGAATCGCACTCTTGGCCAAGCTCCTCATGACGgtacgccacc ... gtggtggcagTACGATGATTCAAGGTCTCAAGAGCTGCTGGAGCGGAAGATAAAGAATGCC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CGTCACGGTTCCCGAATCCCTCTCCTTCCTCGACACCGCCACCATCCCCATGTACTTCGCCGCCATCGGAATCGCACTCTTGGCCAAGCTCCTCATGACGgtacgccaccaccaccaccaccaccaccaccaccactcatcttattatcaatgtcatgattattattacagcgattcatctcgtcgcacaccacgtgttc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTCCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - caccacc