1 5' 3' | 2 5' 3' |
...tgggatatcatggaacctacaaaacgaggtccaagaacccaaaatagattctttcattaaagatgttctgacaataaagggatgtgatgggtggtggcagTACGATGATTCAAGGTCTCAAGAGCTGCTGGAGCGGAAGATAAAGAATGCCCCTAGAGGGCGAGGTAGTGTCAAAATGTCACACGAGAGGAGTGGGAGGA
species | Glycine max |
transcript | GLYMA20G02780.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: TGTACTTCGCCGCCATCGGAATCGCACTCTTGGCCAAGCTCCTCATGACG TACGATGATTCAAGGTCTCAAGAGCTGCTGGAGCGGAAGATAAAGAATGCCEST: gi|298169842|gb|HO018466.1|HO018466
genomic: TGTACTTCGCCGCCATCGGAATCGCACTCTTGGCCAAGCTCCTCATGACGgtacgccacc ... gtggtggcagTACGATGATTCAAGGTCTCAAGAGCTGCTGGAGCGGAAGATAAAGAATGCC
EST: TGTACTTCGCCGCCATCGGAATCGCACTCTTGGCCAAGCTCCTCATGACG TACGATGATTCAAGGTCTCAAGAGCTGCTGGAGCGGAAGATAAAGAATGCCEST: gi|51341870|gb|CO983187.1|CO983187
genomic: TGTACTTCGCCGCCATCGGAATCGCACTCTTGGCCAAGCTCCTCATGACGgtacgccacc ... gtggtggcagTACGATGATTCAAGGTCTCAAGAGCTGCTGGAGCGGAAGATAAAGAATGCC
EST: TGTACTTCGCCGCCATCGGAATCGCACTCTTGGCCAAGCTCCTCATGACG TACGATGATTCAAGGTCTCAAGAGCTGCTGGAGCGGAAGATAAAGAATGCC
genomic: TGTACTTCGCCGCCATCGGAATCGCACTCTTGGCCAAGCTCCTCATGACGgtacgccacc ... gtggtggcagTACGATGATTCAAGGTCTCAAGAGCTGCTGGAGCGGAAGATAAAGAATGCC
agattctttcattaaagatgttctgacaataaagggatgtgatgggtggtggcagTACGATGATTCAAGGTCTCAAGAGCTGCTGGAGCGGAAGATAAAGAATGCCCCTAGAGGGCGAGGTAGTGTCAAAATGTCACACGAGAGGAGTGGGAGGA
ttctgac putative branch site (score: 2)
tttcattaaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tgggatatcatggaacctacaaaacgaggtccaagaacccaaaatagattctttcattaaagatgttctgacaataaagggatgtgatgggtggtggcagTACGATGATTCAAGGTCTCAAGAGCTGCTGGAGCGGAAGATAAAGAATGCCCCTAGAGGGCGAGGTAGTGTCAAAATGTCACACGAGAGGAGTGGGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - catggaa
- - - - - - - -cctacaa
- - - - - - - - - - - - - - - ccaagaa
- - - - - - - - - - - - - - - - - - -cccaaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ttctgac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gtgatgg