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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgcattgctgaattgtatagtgcttgtactgagctttggccttttttgttgtttgttcattcagtgtcacattgctgcttgttcttgacagGTGATGACATTCCCAACTTCTTGTGGTGCTTGTGCCGCTAGGTGTGAGACTCGAATGTTTGTCACCA

Basic information

species Glycine max
transcript GLYMA20G02690.1
intron # 9
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA20G02690.1 (Glycine max), 3'ss of exon 9
lower sequence: Vv01s0011g01690.t01 (Vitis vinifera), 3'ss of exon 9
gtatgcattgctgaattgtat-agtgcttgtactgagctttggccttttttgttgtttgttcattcagtgt-cacattgctgcttgttcttg----acagGTGATGACATTCCCAACTTCTTGTGGTGCTTGTGCCGCTAGGTGTGAGACTCGAATGTTTGTCACCA
||||| |  | ||  ||   | |      ||     |||||  || |||   || |   |||||  | |   |   |||     |||| |||    |||||| ||||| |||||| |  | ||||| |||||||| || || || ||||| ||||||||||||||||
gtatg-acagttgttttcagttaacaaaggttacatgctttctccatttcc-ttatgacttcatgtattacacctgttgtgttctgtttttgtgtgacagGTAATGACTTTCCCATCAACATGTGGAGCTTGTGCTGCAAGATGCGAGACCCGAATGTTTGTCACCA
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|10843536|gb|BF066816.1|BF066816
EST:     ACAGTTCAGAAATTGCTGAAGCCTTATTTCGATATACTGCACCAGAAGAG                         GTGATGACATTTCCATCTTCTTGTGGTGCTTGTGCTGCTAGTTGTGAGACT
genomic: ACAGTTCAGAAATTGCTGAAGCCTTATTTCGATATACTGCACCAGAAGAGgtatgcattg ... ttcttgacagGTGATGACATTCCCAACTTCTTGTGGTGCTTGTGCCGCTAGGTGTGAGACT
EST: gi|17963855|gb|BM270599.1|BM270599
EST:     ACAGTTCAGAAATTGCTGAAGCCTTATTTCGATATACTGCACCAGAAGAG                         GTGATGACATTCCCAACTTCTTGTGGTGCTTGTGCCGCTAGGTGTGAGACT
genomic: ACAGTTCAGAAATTGCTGAAGCCTTATTTCGATATACTGCACCAGAAGAGgtatgcattg ... ttcttgacagGTGATGACATTCCCAACTTCTTGTGGTGCTTGTGCCGCTAGGTGTGAGACT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tggccttttttgttgtttgttcattcagtgtcacattgctgcttgttcttgacagGTGATGACATTCCCAACTTCTTGTGGTGCTTGTGCCGCTAGGTGTGAGACTCGAATGTTTGTCACCA
                                         cttgttctt  CT-rich tract
     ttttttgtt  TA-rich tract