1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' |
...gatgaatgggtttaatgcaattcagattgtttagaattgttggcatgttatctacacttagctgcatagtttttcgtgtaaatatattcatgtcttacagTTGAGGAATACGAGAGGTCATGGGAACAAAATGAAGAATTAGGTCTGAATGATATAGACACCTCTTCTGCCGATGCTGCTTATGAATCAACAAATACTAC
species | Glycine max |
transcript | GLYMA20G02690.1 |
intron # | 15 |
splice site | 3' |
intron type | U2 |
EST: TTTTGTAGCTCCTGCAACTGATGATCTGAAAGAGGACAATCAATTATCAT TTGAGGAATACGAGAGGTCATGGGAACAAAATGAAGAATTAGGTCTGAATGEST: gi|11688142|gb|BF595818.1|BF595818
genomic: TTTTGTAGCTCCTGCAACTGATGATCTGAAAGAGGACAATCAATTATCATgtaagttttc ... tgtcttacagTTGAGGAATACGAGAGGTCATGGGAACAAAATGAAGAATTAGGTCTGAATG
EST: TTTTGTAGCTCCTGCAACTGATGATCTGAAAGAGGACAATCAATTATCAT TTGAGGAATACGAGAGGTCATGGGAACAAAATGAAGAATTAGGTCTGAATG
genomic: TTTTGTAGCTCCTGCAACTGATGATCTGAAAGAGGACAATCAATTATCATgtaagttttc ... tgtcttacagTTGAGGAATACGAGAGGTCATGGGAACAAAATGAAGAATTAGGTCTGAATG
tgttatctacacttagctgcatagtttttcgtgtaaatatattcatgtcttacagTTGAGGAATACGAGAGGTCATGGGAACAAAATGAAGAATTAGGTCTGAATGATATAGACACCTCTTCTGCCGATGCTGCTTATGAATCAACAAATACTAC
tgtaaatatattcat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gatgaatgggtttaatgcaattcagattgtttagaattgttggcatgttatctacacttagctgcatagtttttcgtgtaaatatattcatgtcttacagTTGAGGAATACGAGAGGTCATGGGAACAAAATGAAGAATTAGGTCTGAATGATATAGACACCTCTTCTGCCGATGCTGCTTATGAATCAACAAATACTAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- tgaatgg
- - - - - - -aatgcaa
- - - - - - - - - - - - - - - - - - - - - gcatgtt
- - - - - - - - - - - - - - - - - - - - - - - - - tctacac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - tagctgc