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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...ttctatattctgtattctatattctatattattggcagtccgcctgagccacatgttttgttagttcttctacacttttgttgatcttaacaatgaccagATATTCCTTACTTCCAAGAAGTAATTGTTATGGCATCCACATGTGATTCCTGTGGTTACCGCAACTCTGAG

Basic information

species Glycine max
transcript GLYMA20G02690.1
intron # 10
splice site 3'
intron type U12 (go to U12 genes for details)

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA20G02690.1 (Glycine max), 3'ss of exon 10
lower sequence: Vv01s0011g01690.t01 (Vitis vinifera), 3'ss of exon 10
--ttctatattctgtattctatattctatattattggcagtccgcctgagccacatgttttgttagttct-tctacacttttgttgatcttaacaatgaccagATATTCCTTACTTCCAAGAAGTAATTGTTATGGCATCCACATGTGATTCCTGTGGTTACCGCAACTCTGAG
   || ||||| |  ||  | | |   ||   |||   | |  | |  |     |  |||  ||| | || |||  | |  |    |    |   |    |||| ||||| || ||||||||||||||||||||||| ||  | ||||||   ||||| ||||| || || |||
aaatccatatttttaatcttgt-tagcatggaatt--taatgtggcaaataagaaactttctttaatgctgtctctagtgataactaatcaacttacttgcagACATTCCATATTTCCAAGAAGTAATTGTTATGGCTTCATCTTGTGATGGTTGTGGCTACCGAAATTCCGAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|10843536|gb|BF066816.1|BF066816
EST:     TTCTTGTGGTGCTTGTGCTGCTAGTTGTGAGACTCGAATGTTTGTCACCA                         ATATTCCTTACTTCCAAGAAGTAATAGTTATGGCATCCACATGTGATTCCT
genomic: TTCTTGTGGTGCTTGTGCCGCTAGGTGTGAGACTCGAATGTTTGTCACCAgtatcctttt ... caatgaccagATATTCCTTACTTCCAAGAAGTAATTGTTATGGCATCCACATGTGATTCCT
EST: gi|17963855|gb|BM270599.1|BM270599
EST:     TTCTTGTGGTGCTTGTGCCGCTAGGTGTGAGACTCGAATGTTTGTCACCA                         ATATTCCTTACTTCCAAGAAGTAATTGTTATGGCATCCACATGTGATTCCT
genomic: TTCTTGTGGTGCTTGTGCCGCTAGGTGTGAGACTCGAATGTTTGTCACCAgtatcctttt ... caatgaccagATATTCCTTACTTCCAAGAAGTAATTGTTATGGCATCCACATGTGATTCCT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gagccacatgttttgttagttcttctacacttttgttgatcttaacaatgaccagATATTCCTTACTTCCAAGAAGTAATTGTTATGGCATCCACATGTGATTCCTGTGGTTACCGCAACTCTGAG
                                     gatcttaac  putative branch site 
          ttttgtta  TA-rich tract