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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCTTTGCGGGGTATCCATCTCGACACATCCATCAGATAGCATCAGCTATCACTGCGCGTGCCATCCGGACCTTCTCTGCTAGGGGCATTGATCCACAAAGgtattcttgatttctgcatttaccattccttgtcctcagttgtattgtgttctagtattctaacaccaatcatttttcatgatcaattatcag

Basic information

species Glycine max
transcript GLYMA20G02670.2
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA20G02670.1 (Glycine max), 5'ss of exon 6
lower sequence: Vv01s0011g01710.t01 (Vitis vinifera), 5'ss of exon 6
GCTTTGCGGGGTATCCATCTCGACACATCCATCAGATAGCATCAGCTATCACTGCGCGTGCCATCCGGACCTTCTCTGCTAGGGGCATTGATCCACAAAGgtattcttgatttctgcatttaccattcct-tgtcctcagttgtattgtgttctagtat-tctaacaccaatcatttttcatgatcaattatcag
| ||||| || ||  |||| |||||  | || ||||| ||| |||| || | ||| ||||||||  |||||||||||||||| ||||| || |||||||||||       ||  |    | |   ||| |   | ||||  || |       ||  ||| | |  |  ||                         
GTTTTGCTGGTTACTCATCACGACATGTGCACCAGATTGCAGCAGCCATAATTGCTCGTGCCATTAGGACCTTCTCTGCTAGAGGCATAGACCCACAAAGgtaccaccccttcattttctgaaagttcttacattctcacctgcaactaaaactgttatgtttctcctcag------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|51338276|gb|CO982142.1|CO982142
EST:     ACTGCGCGTGCCATCCGGACCTTCTCTGCTAGGGGCATTGATCCACAAAG                         TGCACTTCCTGAGGATGAATGGTTTGTGGAAACTGCAAAGTCAGCAATAAA
genomic: ACTGCGCGTGCCATCCGGACCTTCTCTGCTAGGGGCATTGATCCACAAAGgtattcttga ... caattatcagTGCACTTCCTGAGGATGAATGGTTTGTGGAAACTGCAAAGTCAGCAATAAA
EST: gi|18732402|gb|BM527025.1|BM527025
EST:     ACTGCGCGTGCCATCCGGACCTTCTCTGCTAGGGGCATTGATCCACAAAG                         TGCACTTCCTGAGGATGAATGGTTTGTGGAAACTGCAAAGTCAGCAATAAA
genomic: ACTGCGCGTGCCATCCGGACCTTCTCTGCTAGGGGCATTGATCCACAAAGgtattcttga ... caattatcagTGCACTTCCTGAGGATGAATGGTTTGTGGAAACTGCAAAGTCAGCAATAAA