1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...ttatagagaattattgtctttctctttagtttggtaaaattttgtggatagggtttctttctctgcactcctctcacccatagctgtctttttgtgacagTTAATTCTTGATATGCACTTTACTGTTGAAATTGCTCGCTTTGCGGGGTATCCATCTCGACACATCCATCAGATAGCATCAGCTATCACTGCGCGTGCCA
species | Glycine max |
transcript | GLYMA20G02670.2 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: GTGCATTAGAGGATAATTCAGCTCCTCTAAAGCCACTTGGTTTGCAGCAG TTAATTCTTGATATGCACTTTACTGTTGAAATTGCTCGCTTTGCGGGGTATEST: gi|18732402|gb|BM527025.1|BM527025
genomic: GTGCATTAGAGGATAATTCAGCTCCTCTAAAGCCACTTGGTTTGCAGCAGgtattttata ... tttgtgacagTTAATTCTTGATATGCACTTTACTGTTGAAATTGCTCGCTTTGCGGGGTAT
EST: GTGCATTAGAGGATAATTCAGCTCCTCTAAAGCCACTTGGTTTGCAGCAG TTAATTCTTGATATGCACTTTACTGTTGAAATTGCTCGCTTTGCGGGGTATEST: gi|193626940|gb|FK577518.1|FK577518
genomic: GTGCATTAGAGGATAATTCAGCTCCTCTAAAGCCACTTGGTTTGCAGCAGgtattttata ... tttgtgacagTTAATTCTTGATATGCACTTTACTGTTGAAATTGCTCGCTTTGCGGGGTAT
EST: GTGCATTAGAGGATAATTCAGTTCCTCTAAAGCCACTTGGTTTGCAGCAG TTAATTCTTGATATGCACTTTACTGTTGAAATTGCTCGCTTTGCGGGGTAT
genomic: GTGCATTAGAGGATAATTCAGCTCCTCTAAAGCCACTTGGTTTGCAGCAGgtattttata ... tttgtgacagTTAATTCTTGATATGCACTTTACTGTTGAAATTGCTCGCTTTGCGGGGTAT
ggatagggtttctttctctgcactcctctcacccatagctgtctttttgtgacagTTAATTCTTGATATGCACTTTACTGTTGAAATTGCTCGCTTTGCGGGGTATCCATCTCGACACATCCATCAGATAGCATCAGCTATCACTGCGCGTGCCA
ctctcac putative branch site (score: 3)
ctgtcttttt putative PPT
tttcttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttatagagaattattgtctttctctttagtttggtaaaattttgtggatagggtttctttctctgcactcctctcacccatagctgtctttttgtgacagTTAATTCTTGATATGCACTTTACTGTTGAAATTGCTCGCTTTGCGGGGTATCCATCTCGACACATCCATCAGATAGCATCAGCTATCACTGCGCGTGCCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TCAGCT