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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...acctgaactataaaacaacagacttttgtaacaattcaaatcactttcttcaaccatattatatgcattcaaattttgttgtttgttcttgatattatagGATATCTGAAGAGGCTGTGGAAGTAAAGCATGAATTGATTGAGCTGCAAAAGCATATCTCAGCACAAGGTATTCTTGTTCAGGATTTAATGACTGGTGTC

Basic information

species Glycine max
transcript GLYMA20G02670.2
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA20G02670.1 (Glycine max), 3'ss of exon 2
lower sequence: Vv01s0011g01710.t01 (Vitis vinifera), 3'ss of exon 2
----acctgaactataaaacaacagacttttgtaacaattcaaatcactttcttcaaccatatt-atatgcattcaaattttgttgtttgttcttgatattatagGATATCTGAAGAGGCTGTGGAAGTAAAGCATGAATTGATTGAGCTGCAAAAGCATATCTCAGCACAAGGTATTCTTGTTCAGGATTTAATGACTGGTGTC
    |    |  |||| | ||   || |||   |   |||    |||  ||  | ||  ||  | ||    ||    ||  | ||| || |  ||   ||  |||||||||||| || | ||| ||| |  ||||||| || |||||||||||||||||||| || |||||||| |||||||| |||||||| |||| |||||| 
tttaattccagttatagatcacttgaattt--cagttatttggttca--ttaattaatgattctgatccatatgtctatactattgattata-ttataatggtagGATATCTGATGAAGTTGTTGAAATGGAGCATGAGTTAATTGAGCTGCAAAAGCATATTTCTGCACAAGGGATTCTTGTGCAGGATTTGATGAGTGGTGTG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|213595084|gb|DB971873.1|DB971873
EST:     GTGGAGAACTTGTGCGGCAATATGCACTCCAAGTTCTTGGCTTTCTTGAG                         GATATCTGAAGAGGCTGTGGAAGTAAAGCATGAATTGATTGAGCTGCAAAA
genomic: GTGGAGAACTTGTGCGGCAATATGCACTCCAAGTTCTTGGCTTTCTTGAGgtaaacattt ... gatattatagGATATCTGAAGAGGCTGTGGAAGTAAAGCATGAATTGATTGAGCTGCAAAA
EST: gi|209703062|gb|BW670174.1|BW670174
EST:     GTGGAGAACTTGTGCGGCAATATGCACTCCAAGTTCTTGGCTTTCTTGAG                         GATATCTGAAGAGGCTGTGGAAGTAAAGCATGAATTGATTGAGCTGCAAAA
genomic: GTGGAGAACTTGTGCGGCAATATGCACTCCAAGTTCTTGGCTTTCTTGAGgtaaacattt ... gatattatagGATATCTGAAGAGGCTGTGGAAGTAAAGCATGAATTGATTGAGCTGCAAAA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttcttcaaccatattatatgcattcaaattttgttgtttgttcttgatattatagGATATCTGAAGAGGCTGTGGAAGTAAAGCATGAATTGATTGAGCTGCAAAAGCATATCTCAGCACAAGGTATTCTTGTTCAGGATTTAATGACTGGTGTC
                                         tcttgat  putative branch site (score: 4)
          atattatatgcattca  TA-rich tract