1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
GGGATCAGGAAGCTTTGCTGTGAGCTCCTAGATTTAAAGGATTCTGTGGAGAACTTGTGCGGCAATATGCACTCCAAGTTCTTGGCTTTCTTGAGgtaaacattttgtgtattgttctgaatcacaatttatttgaagttacccaccaaggaatttcatgacccttttataaattggtgtgccttttgtctatat...
species | Glycine max |
transcript | GLYMA20G02670.1 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: GTGGAGAACTTGTGCGGCAATATGCACTCCAAGTTCTTGGCTTTCTTGAG GATATCTGAAGAGGCTGTGGAAGTAAAGCATGAATTGATTGAGCTGCAAAAEST: gi|209703062|gb|BW670174.1|BW670174
genomic: GTGGAGAACTTGTGCGGCAATATGCACTCCAAGTTCTTGGCTTTCTTGAGgtaaacattt ... gatattatagGATATCTGAAGAGGCTGTGGAAGTAAAGCATGAATTGATTGAGCTGCAAAA
EST: GTGGAGAACTTGTGCGGCAATATGCACTCCAAGTTCTTGGCTTTCTTGAG GATATCTGAAGAGGCTGTGGAAGTAAAGCATGAATTGATTGAGCTGCAAAAEST: gi|22931733|gb|BU548872.1|BU548872
genomic: GTGGAGAACTTGTGCGGCAATATGCACTCCAAGTTCTTGGCTTTCTTGAGgtaaacattt ... gatattatagGATATCTGAAGAGGCTGTGGAAGTAAAGCATGAATTGATTGAGCTGCAAAA
EST: GTGGAGAACTTGTGCGGCAATATGCACTCCAAGTTCTTGGCTTTCTTGAG GATATCTGAAGAGGCTGTGGAAGTAAAGCATGAATTGATTGAGCTGCAAAA
genomic: GTGGAGAACTTGTGCGGCAATATGCACTCCAAGTTCTTGGCTTTCTTGAGgtaaacattt ... gatattatagGATATCTGAAGAGGCTGTGGAAGTAAAGCATGAATTGATTGAGCTGCAAAA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GGGATCAGGAAGCTTTGCTGTGAGCTCCTAGATTTAAAGGATTCTGTGGAGAACTTGTGCGGCAATATGCACTCCAAGTTCTTGGCTTTCTTGAGgtaaacattttgtgtattgttctgaatcacaatttatttgaagttacccaccaaggaatttcatgacccttttataaattggtgtgccttttgtctatat
- - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ccaccaa