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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAGAATGGAGAGTAGCGAGGAAGAAGATGATTTCCCTTCCATTGAGAGCATCATTCCCCAGTCCAAGGTTGACTCTCTCTATCAGTCTCACACCGAAAAGgttcgctgtttctattccttcttttcgcaatcaacatcaaacaatgcacactctgaagaaacctttttttttgtttgtttgtttaattgcatgtttgtgatgaaacaaaaacttgtgttttttttttcag

Basic information

species Glycine max
transcript GLYMA20G02670.1
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|213595084|gb|DB971873.1|DB971873
EST:     TCATTCCCCAGTCCAAGGTTGACTCTCTCTATCAGTCTCACACCG--AA-                         ---A--AGGAAGCTTTGCTGTGAGCTCCTAGATTTAAAGGATTCTGTGGAG
genomic: TCATTCCCCAGTCCAAGGTTGACTCTCTCTATCAGTCTCACACCGAAAAGgttcgctgtt ... tttttttcagGGGATCAGGAAGCTTTGCTGTGAGCTCCTAGATTTAAAGGATTCTGTGGAG
EST: gi|193446706|gb|FK410885.1|FK410885
EST:     TCATTCCCCAGTCCAAGGTTGACTCTCTCTATCAGTCTCACACCGAAAAG                         GGGATCAGGAAGCTTTGCTGTGAGCTCCTAGATTTAAAGGATTCTGTGGAG
genomic: TCATTCCCCAGTCCAAGGTTGACTCTCTCTATCAGTCTCACACCGAAAAGgttcgctgtt ... tttttttcagGGGATCAGGAAGCTTTGCTGTGAGCTCCTAGATTTAAAGGATTCTGTGGAG
EST: gi|209703062|gb|BW670174.1|BW670174
EST:     TCATTCCCCAGTCCAAGGTTGACTCTCTCTATCAGTCTCACACCGAAAAG                         GGGATCAGGAAGCTTTGCTGTGAGCTCCTAGATTTAAAGGATTCTGTGGAG
genomic: TCATTCCCCAGTCCAAGGTTGACTCTCTCTATCAGTCTCACACCGAAAAGgttcgctgtt ... tttttttcagGGGATCAGGAAGCTTTGCTGTGAGCTCCTAGATTTAAAGGATTCTGTGGAG
EST: gi|14259208|gb|BG882116.1|BG882116
EST:     TCATTCCCCAGTCCAAGGTTGACTCTCTCTATCAGTCTCACACCGAAAAG                         GGGATCAGGAAGCTTTGCTGTGAGCTCCTAAATTTAAAG
genomic: TCATTCCCCAGTCCAAGGTTGACTCTCTCTATCAGTCTCACACCGAAAAGgttcgctgtt ... tttttttcagGGGATCAGGAAGCTTTGCTGTGAGCTCCTAGATTTAAAG
EST: gi|22931733|gb|BU548872.1|BU548872
EST:     TCATTCCCCAGTCCAAGGTTGACTCTCTCTATCAGTCTCACACCGANNNN                         NNNATCAGGAAGCTTTGCTGTGAGCTCCTAGATTTAAAGGATTCTGTGGAG
genomic: TCATTCCCCAGTCCAAGGTTGACTCTCTCTATCAGTCTCACACCGAAAAGgttcgctgtt ... tttttttcagGGGATCAGGAAGCTTTGCTGTGAGCTCCTAGATTTAAAGGATTCTGTGGAG