1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
gttcgctgtttctattccttcttttcgcaatcaacatcaaacaatgcacactctgaagaaacctttttttttgtttgtttgtttaattgcatgtttgtgatgaaacaaaaacttgtgttttttttttcagGGGATCAGGAAGCTTTGCTGTGAGCTCCTAGATTTAAAGGATTCTGTGGAGAACTTGTGCGGCAATATGCACTCCAAGTTCTTGGCTTTCTTGAG
species | Glycine max |
transcript | GLYMA20G02670.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: TCATTCCCCAGTCCAAGGTTGACTCTCTCTATCAGTCTCACACCG--AA- ---A--AGGAAGCTTTGCTGTGAGCTCCTAGATTTAAAGGATTCTGTGGAGEST: gi|193446706|gb|FK410885.1|FK410885
genomic: TCATTCCCCAGTCCAAGGTTGACTCTCTCTATCAGTCTCACACCGAAAAGgttcgctgtt ... tttttttcagGGGATCAGGAAGCTTTGCTGTGAGCTCCTAGATTTAAAGGATTCTGTGGAG
EST: TCATTCCCCAGTCCAAGGTTGACTCTCTCTATCAGTCTCACACCGAAAAG GGGATCAGGAAGCTTTGCTGTGAGCTCCTAGATTTAAAGGATTCTGTGGAGEST: gi|209703062|gb|BW670174.1|BW670174
genomic: TCATTCCCCAGTCCAAGGTTGACTCTCTCTATCAGTCTCACACCGAAAAGgttcgctgtt ... tttttttcagGGGATCAGGAAGCTTTGCTGTGAGCTCCTAGATTTAAAGGATTCTGTGGAG
EST: TCATTCCCCAGTCCAAGGTTGACTCTCTCTATCAGTCTCACACCGAAAAG GGGATCAGGAAGCTTTGCTGTGAGCTCCTAGATTTAAAGGATTCTGTGGAGEST: gi|14259208|gb|BG882116.1|BG882116
genomic: TCATTCCCCAGTCCAAGGTTGACTCTCTCTATCAGTCTCACACCGAAAAGgttcgctgtt ... tttttttcagGGGATCAGGAAGCTTTGCTGTGAGCTCCTAGATTTAAAGGATTCTGTGGAG
EST: TCATTCCCCAGTCCAAGGTTGACTCTCTCTATCAGTCTCACACCGAAAAG GGGATCAGGAAGCTTTGCTGTGAGCTCCTAAATTTAAAGEST: gi|22931733|gb|BU548872.1|BU548872
genomic: TCATTCCCCAGTCCAAGGTTGACTCTCTCTATCAGTCTCACACCGAAAAGgttcgctgtt ... tttttttcagGGGATCAGGAAGCTTTGCTGTGAGCTCCTAGATTTAAAG
EST: TCATTCCCCAGTCCAAGGTTGACTCTCTCTATCAGTCTCACACCGANNNN NNNATCAGGAAGCTTTGCTGTGAGCTCCTAGATTTAAAGGATTCTGTGGAG
genomic: TCATTCCCCAGTCCAAGGTTGACTCTCTCTATCAGTCTCACACCGAAAAGgttcgctgtt ... tttttttcagGGGATCAGGAAGCTTTGCTGTGAGCTCCTAGATTTAAAGGATTCTGTGGAG
tgtttgtttaattgcatgtttgtgatgaaacaaaaacttgtgttttttttttcagGGGATCAGGAAGCTTTGCTGTGAGCTCCTAGATTTAAAGGATTCTGTGGAGAACTTGTGCGGCAATATGCACTCCAAGTTCTTGGCTTTCTTGAG
gtttaat putative branch site (score: 4)
cttgtgtttttttttt putative PPT
aaaaacttgtgttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttcgctgtttctattccttcttttcgcaatcaacatcaaacaatgcacactctgaagaaacctttttttttgtttgtttgtttaattgcatgtttgtgatgaaacaaaaacttgtgttttttttttcagGGGATCAGGAAGCTTTGCTGTGAGCTCCTAGATTTAAAGGATTCTGTGGAGAACTTGTGCGGCAATATGCACTCCAAGTTCTTGGCTTTCTTGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA