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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CCCAGCCTTGGACCCGGTGTGTACCTTGGTGCAGTTGAGAGAGCAACATCATTTATTACTGATGATCTTTGGTATGGAATTTTTGCAGGAACAAACCCAGgtaatgtggttctagttctcagtcaacaactagaagttctcagccaggagctatttgttaatcttaaatctggggtctaacttgcctttaatgcaaaata...

Basic information

species Glycine max
transcript GLYMA20G02500.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA20G02500.1 (Glycine max), 5'ss of exon 3
lower sequence: LOC_Os08g31470.1 (Oryza sativa), 5'ss of exon 4
CCCAGCCTTGGACCCGGTGTGTACCTTGGTGCAGTTGAGAGAGCAACATCATTTATTACTGATGATCTTTGGTATGGAATTTTTGCAGGAACAAACCCAGgtaatgtggttctagttct---cagtcaacaactagaagttctcagccaggagctat--ttgttaatcttaa-atctggggtctaacttgcctttaa-tgcaaaata-----------------------------------------------------------------------------
|| |  ||||| || ||||| ||||| ||||| |||||| |||||||||||||||| || |||||| |||||||||| || | ||| |||||||| ||||||||  |  | |     |    || |  |   || ||   |    |    |   |||  |||    |  ||  |||| | | |  |      || || ||||  |                                                                               
CCGAATCTTGGGCCTGGTGTATACCTAGGTGCTGTTGAGCGAGCAACATCATTTATCACAGATGATGTTTGGTATGGTATCTATGCGGGAACAAATCCAGgtaacattttgccctgccagaacaatttatttctggagccttcatgttttggcatatggttgcagcttgtagcatcttgtgccagatccttgttaaaatgcattaacttctgctcattgcttctttagctgtcatctaatttttcataacatatttgttctgtaacaaatcatttaatctgcag

upper sequence: GLYMA20G02500.1 (Glycine max), 5'ss of exon 3
lower sequence: LOC_Os04g52479.3 (Oryza sativa), 5'ss of exon 3
CCCAGCCTTGGACCCGGTGTGTACCTTGGTGCAGTTGAGAGAGCAACATCATTTATTACTGATGATCTTTGGTATGGAATTTTTGCAGGAACAAACCCAGgtaatgtggttctagttctcagtcaacaactagaagttctcagccaggagctatttgttaatcttaaatctggggtctaacttgcctttaatgcaaaata--------
||||  ||||| || || || || ||||| || ||||| |||||||| || || || || |||||  ||||||||||||| | ||| ||||||||||||||||  |  |||  |      | | | |   |    | | |    |   |  | |||||  || | ||| |   |   ||| |  | || || |  |  |         
CCCAATCTTGGGCCTGGCGTTTATCTTGGAGCTGTTGAAAGAGCAACTTCTTTCATCACAGATGACGTTTGGTATGGAATCTATGCTGGAACAAACCCAGgtagagcagttaca------aattagctggtcagggcttt--atctacaattgtttgtctatttaaaaacaatgtcttaagtaacattaaaagacacttcaactcact

upper sequence: GLYMA20G02500.1 (Glycine max), 5'ss of exon 3
lower sequence: GRMZM2G150212_T03 (Zea mays), 5'ss of exon 6
CCCAGCCTTGGACCCGGTGTGTACCTTGGTGCAGTTGAGAGAGCAACATCATTTATTACTGATGATCTTTGGTATGGAATTTTTGCAGGAACAAACCCAGgtaa-tgtggttctagttctcagtcaacaactagaagttctcagccaggagctatttgttaatcttaaatctggggtctaacttg-cctttaatgcaaaata------------------------------------------------------------------
|| |  |||||||| || || ||||| ||||| ||||||||||||||||||||||| || |||||| ||||||| || || | ||||||||||||||||||||| |  | | | | |  | | |        |    ||     |     |  |||    | |  | | |   | || ||  ||| | |||| ||  | |||                                                                  
CCTAATCTTGGACCTGGAGTTTACCTAGGTGCTGTTGAGAGAGCAACATCATTTATAACAGATGATGTTTGGTACGGGATATATGCAGGAACAAACCCAGgtaagtaagatgccaataataact--gtggtcaagtttttcacactttatggcattccccactgctcattgcagtgtttactttgacttttattgtgagatatatttttcttcagggtattattgatatccttatcctcatgtcatctacgttgtaatgtggctgcag

upper sequence: GLYMA20G02500.1 (Glycine max), 5'ss of exon 3
lower sequence: GRMZM2G078541_T01 (Zea mays), 5'ss of exon 5
CCCAGCCTTGGACCCGGTGTGTACCTTGGTGCAGTTGAGAGAGCAACATCATTTATTACTGATGATCTTTGGTATGGAATTTTTGCAGGAACAAACCCAGgtaatgtggttctagt--tctcagtcaacaactagaagttctcagccaggagctatttgttaatcttaaatctggggtctaacttg-cctttaatgcaaaata------------------------------------------------------------------
|| |  ||||| || || || ||||| ||||| ||||||||||||||||||||||| || |||||| ||||||| || ||||  ||||||||||||||||||||  ||    || |    |  |||||    | | | ||    ||        |||    | || | | |  || ||  |  ||| | |||| ||  | |||                                                                  
CCTAATCTTGGGCCTGGAGTTTACCTAGGTGCCGTTGAGAGAGCAACATCATTTATAACAGATGATGTTTGGTACGGGATTTACGCAGGAACAAACCCAGgtaagatgtcaataataactttggtcaagtttttgcactttatggc--------attccccactcctcatttcggtgttcactttgacttttattgtgatatatatgtttattcagggtattattgatattctttatcctcatgtcctctatgttgtatgtggctgcag

upper sequence: GLYMA20G02500.1 (Glycine max), 5'ss of exon 3
lower sequence: GRMZM2G033724_T02 (Zea mays), 5'ss of exon 4
CCCAGCCTTGGACCCGGTGTGTACCTTGGTGCAGTTGAGAGAGCAACATCATTTATTACTGATGATCTTTGGTATGGAATTTTTGCAGGAACAAACCCAGgtaatgtggttcta-gttctcagtcaacaactagaagtt---ctcagccaggagctatttgttaatctta-aatctggggtctaacttgcctttaatgcaaaata
|||| |||||| || ||||| || ||||| || || || || |||||||| ||||| || |||||| ||||||||||||| | ||| ||||||||||||||||  |  ||| || ||| |  |   |  |   ||| ||        || | |||| || |||  |   | ||| |   || ||  |    | | | |  |    
CCCAACCTTGGGCCTGGTGTTTATCTTGGAGCTGTCGAAAGGGCAACATCTTTTATCACGGATGATGTTTGGTATGGAATCTATGCTGGAACAAACCCAGgtagaggagttataagttatgtggttaatataggaaattaagtattacctgcagct-ttagttgcttggataattttctgtatatttaatttctcaggtga----

upper sequence: GLYMA20G02500.1 (Glycine max), 5'ss of exon 3
lower sequence: GRMZM2G102346_T01 (Zea mays), 5'ss of exon 4
CCCAGCCTTGGACCCGGTGTGTACCTTGGTGCAGTTGAGAGAGCAACATCATTTATTACTGATGATCTTTGGTATGGAATTTTTGCAGGAACAAACCCAGgtaatgtggttctagttct--cagtcaacaactagaagttctcagccaggagctatttgttaatcttaaatctggggtctaacttgccttta-atgcaaaata--------
|||| |||||| || ||||| || ||||| || || || || |||||||| || || || |||||| ||||||||||||| | ||| ||||||||||||||||  |  ||| ||  |    | || || |  ||| || |       | |   || |||  |   |||| |    |||   | ||  || || ||  ||| |         
CCCAACCTTGGGCCTGGTGTTTATCTTGGAGCTGTCGAAAGGGCAACATCTTTCATCACAGATGATGTTTGGTATGGAATCTATGCTGGAACAAACCCAGgtagagcagttataaattatgcggttaata--taggagatt------aagtattacttgc-agctttaattgcttggtt--atttatctatatatttaaattttcatgaga

upper sequence: GLYMA20G02500.1 (Glycine max), 5'ss of exon 3
lower sequence: AT2G35155.1 (Arabidopsis thaliana), 5'ss of exon 4
CCCAGCCTTGGACCCGGTGTGTACCTTGGTGCAGTTGAGAGAGCAACATCATTTATTACTGATGATCTTTGGTATGGAATTTTTGCAGGAACAAACCCAGgtaatgtggttctagttct-cagtcaacaactagaagttctcagccaggagctatttgttaatcttaaatctggggtctaact---tgcctttaatgcaaaata------------------------
|| ||||||||||| ||||| ||||| ||||||||||||||||||||||| ||||| || |||||||  |||||||| || ||||| || ||||| ||||||| |   ||| || ||    ||  ||   ||  |  ||      ||||| ||     |   |    | ||| |  ||  |||   | |     || ||    |                        
CCAAGCCTTGGACCGGGTGTCTACCTCGGTGCAGTTGAGAGAGCAACATCGTTTATCACAGATGATCAGTGGTATGGCATATTTGCTGGCACAAATCCAGgtactccagttataatttcatagcaaatctctgcatctttctgttcaggaactggc-atatttggacactcttgtttcatactgagtactgactatacagggcatctttcatatctatcccaatgcag

upper sequence: GLYMA20G02500.1 (Glycine max), 5'ss of exon 3
lower sequence: AT5G45030.1 (Arabidopsis thaliana), 5'ss of exon 4
CCCAGCCTTGGACCCGGTGTGTACCTTGGTGCAGTTGAGAGAGCAACATCATTTATTACTGATGATCTTTGGTATGGAATTTTTGCAGGAACAAACCCAGgtaatgtggttctagttctcagtcaacaactagaagttctcagccaggagctatttgttaatcttaaatctggggtctaacttgcctttaatgcaaaata
|| ||||| |||||||| || ||| | |||||||| || |||||||| ||||| ||||| ||||| ||||||||||| ||||| || ||||| ||||||||||   | ||   | |    ||     ||||   |  | | |    | |||         || |||| | | || |      |  ||  |          
CCTAGCCTCGGACCCGGAGTCTACTTAGGTGCAGTGGAAAGAGCAACTTCATTCATTACCGATGACCTTTGGTATGGCATTTTCGCTGGAACTAACCCAGgtagcctagtaacaatgtataga-gttaactctgatgtataatggcgtagca------cgattttaattatcggtttctctctttctgcag---------

upper sequence: GLYMA20G02500.1 (Glycine max), 5'ss of exon 3
lower sequence: Vv01s0011g01870.t01 (Vitis vinifera), 5'ss of exon 5
CCCAGCCTTGGACCCGGTGTGTACCTTGGTGCAGTTGAGAGAGCAACATCATTTATTACTGATGATCTTTGGTATGGAATTTTTGCAGGAACAAACCCAGgtaatgtggttctagttctcagtcaacaactagaagtt-ctcagccaggagctat--ttgttaatcttaaatctggggtctaacttgcctttaatgcaaaata
|||||||||||||| || ||||| || |||||||| ||||| |||||||| || || || ||||||||||||||||| || ||||| |||||||||||||||||||| |||| |  |   |   |     | | |  | ||| | ||  |  | |  |||| |       |  |  |     |     | || ||  |     
CCCAGCCTTGGACCTGGGGTGTATCTGGGTGCAGTGGAGAGGGCAACATCCTTCATCACAGATGATCTTTGGTATGGCATCTTTGCCGGAACAAACCCAGgtaatgtagttccaaattgtaagtattgttttgtatctactctgtcaacacttctcattgtgagcaagcgagttctgagtgcatgaatcattcatctagc---