Sequence
atgc intronic sequence ATGC exonic sequenceAGGTGTTTTGACTGATATTCCAGCTATTCTTGTCTTCGTTGCCCGTAAAGTTCACAGGCAATGGCTCAACCATATTCAGTGCCTACCTGCTGCCCTTGAGgtggggaattttggttcttctggctatgttgcaggtttctacatggctttagtggatctcctcacacttttcaattgaattattgattatttatttttgt...
Basic information
species | Glycine max |
transcript | GLYMA20G02500.1 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA20G02500.1 (Glycine max), 5'ss of exon 1
lower sequence: AT5G45030.2 (Arabidopsis thaliana), 5'ss of exon 2
AGGTGTTTTGACTGATATTCCAGCTATTCTTGTCTTCGTTGCCCGTAAAGTTCACAGGCAATGGCTCAACCATATTCAGTGCCTACCTGCTGCCCTTGAGgtggggaattt--tggttcttctggctatgttgcaggtttctacatg-gctttagtggatctcctcacactttt--caattgaattattg-attatttatttttgt--------------------------------------------------------------------------------
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AGGTGTTTTGACAAATATAGCGGCTATTCTTGTTTTTGTTGCTCGGAAAGTTCACAAGCAATGGCTTAATCCTCTTCAGTGTTTACCTACAGCCTTGGAGgtgagatatctcttgcctatgatactttacttataatcgtttgcttgtgcttgaaagagtatattggaacttttagtaatgtaggtactacagcatggaacctattatagaaaactttactaatgccgcctatttatgttgccttctggaatcctttttttacttcatagtatcttgctttgatag
upper sequence: GLYMA20G02500.1 (Glycine max), 5'ss of exon 1
lower sequence: AT2G35155.1 (Arabidopsis thaliana), 5'ss of exon 2
AGGTGTTTTGACTGATATTCCAGCTATTCTTGTCTTCGTTGCCCGTAAAGTTCACAGGCAATGGCTCAACCATATTCAGTGCCTACCTGCTGCCCTTGAGgtgggga-attttg-gttcttctggctatgttgca-ggtttctacatggctttagtggatctcctcacacttttcaattgaattattgattatttatttttgt
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TGGTGTTCTAACGAATGTTCCAGCGATACTTGTCTTTGTTGCTAGGAAAGTCCATAGGCAATGGCTAAATCCAATGCAGTGCCTTCCTTCTGCCCTTGAGgtggagttatcttgtgttctattcccttctacacatagcctttcagaaattttatcggag-----catatatgataagcgatgtgttcatttcataatag---Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|14258572|gb|BG881480.1|BG881480EST: TTCACAGGCAATGGCTCAACCATATTCAGTGCCTACCTGCTGCCCTTGAG GGGCCGGGAGGTGTTTGGTGTGATGTGGATGTT
genomic: TTCACAGGCAATGGCTCAACCATATTCAGTGCCTACCTGCTGCCCTTGAGgtggggaatt ... ttccaaacagGGGCCGGGAGGTGTTTGGTGTGATGTGGATGTT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
AGGTGTTTTGACTGATATTCCAGCTATTCTTGTCTTCGTTGCCCGTAAAGTTCACAGGCAATGGCTCAACCATATTCAGTGCCTACCTGCTGCCCTTGAGgtggggaattttggttcttctggctatgttgcaggtttctacatggctttagtggatctcctcacacttttcaattgaattattgattatttatttttgt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC