Sequence
atgc intronic sequence ATGC exonic sequenceACAGATAAAGAAGGATCTTAGTGAAACAGATAATGCAAACCTGTCAAGAAAGCTCTCAGAGAGAATTGCAAAACTCTCTGGTGGTGTAGCTGTTATAAAGgtacctaattcagtaaacatgtcaggggctgtctgtattctggtggcctttgttctttactttgctaatgttactttatcatctcttactcttgggtttt...
Basic information
species | Glycine max |
transcript | GLYMA20G02380.1 |
intron # | 7 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA20G02380.1 (Glycine max), 5'ss of exon 7
lower sequence: EFJ10978 (Selaginella moellendorffii), 5'ss of exon 6
ACAGATAAAGAAGGATCTTAGTGAAACAGATAATGCAAACCTGTCAAGAAAGCTCTCAGAGAGAATTGCAAAACTCTCTGGTGGTGTAGCTGTTATAAAGgtacctaattcagtaaacatgtcaggggc-tgtctgtattctggtggcctttgttctttactttgctaatgttactttatcatctcttactcttgggtttt
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TGAGATCAAGAAAGACCTGGAGCTGTCAGACTCCGCATATCATTCCGAGAAGCTAGCAGAGAGAATCGCAAAGCTCTCTGGTGGAGTGGCTGTTATCAAGgtttgtagcaacacatatctctcgagaacacgctcaaagtcttagaagctgt-ctttttacag--------------------------------------
upper sequence: GLYMA20G02380.1 (Glycine max), 5'ss of exon 7
lower sequence: EFJ07599 (Selaginella moellendorffii), 5'ss of exon 6
ACAGATAAAGAAGGATCTTAGTGAAACAGATAATGCAAACCTGTCAAGAAAGCTCTCAGAGAGAATTGCAAAACTCTCTGGTGGTGTAGCTGTTATAAAGgtacctaattcagtaaacatgtcaggggc-tgtctgtattctggtggcctttgttctttactttgctaatgttactttatcatctcttactcttgggtttt
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TGAGATCAAGAAAGACTTGGAGCTGTCAGACTCCGCATATCATTCCGAGAAGCTAGCAGAGAGAATCGCAAAGCTCTCTGGTGGAGTGGCTGTTATCAAGgtttgtagcaacacatatctctcgagaacacgctcaaagtcttagaagctgt-ctttttacag--------------------------------------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|46492696|gb|CN472252.1|CN472252EST: TGGTGTAGCTGTTATAAAG GTAGGTGCACATACTGAGCTAGAACTCGAAGATAGGAAACTTAGAATTGAG
genomic: TGGTGTAGCTGTTATAAAGgtacctaatt ... aattgcgtagGTAGGTGCACATACTGAGCTAGAACTCGAAGATAGGAAACTTAGAATTGAG
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
ACAGATAAAGAAGGATCTTAGTGAAACAGATAATGCAAACCTGTCAAGAAAGCTCTCAGAGAGAATTGCAAAACTCTCTGGTGGTGTAGCTGTTATAAAGgtacctaattcagtaaacatgtcaggggctgtctgtattctggtggcctttgttctttactttgctaatgttactttatcatctcttactcttgggtttt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ggggctg