1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...ttgtacagatagaaacaactctcttaaattttttccacaatatgttacattattttcattctcatgtgtttattgcataatgcaataaccaattgcgtagGTAGGTGCACATACTGAGCTAGAACTCGAAGATAGGAAACTTAGAATTGAGGATGCAAAGAATGCAACATTTGCTGCCATAAGCGAGGGAATTGTTCCTG
species | Glycine max |
transcript | GLYMA20G02380.1 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: TGGTGTAGCTGTTATAAAG GTAGGTGCACATACTGAGCTAGAACTCGAAGATAGGAAACTTAGAATTGAG
genomic: TGGTGTAGCTGTTATAAAGgtacctaatt ... aattgcgtagGTAGGTGCACATACTGAGCTAGAACTCGAAGATAGGAAACTTAGAATTGAG
tacattattttcattctcatgtgtttattgcataatgcaataaccaattgcgtagGTAGGTGCACATACTGAGCTAGAACTCGAAGATAGGAAACTTAGAATTGAGGATGCAAAGAATGCAACATTTGCTGCCATAAGCGAGGGAATTGTTCCTG
caataac putative branch site (score: 2)
tattttcatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttgtacagatagaaacaactctcttaaattttttccacaatatgttacattattttcattctcatgtgtttattgcataatgcaataaccaattgcgtagGTAGGTGCACATACTGAGCTAGAACTCGAAGATAGGAAACTTAGAATTGAGGATGCAAAGAATGCAACATTTGCTGCCATAAGCGAGGGAATTGTTCCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - -caactct
- - - - - - - - - - - - - - - - ttccaca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgcataa