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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttgatcatggttgttaggattttgcctcgggttaaatggataaaatttgagacaataataaccagagatgtatttatgttattagttttcctcctcgtagGTTGCAAGCAAAATGAATGAGTTGGCTGGTGATGGTACTAGCACTGCAATTATTTTGGCTCGGGCCATGATTAAGTCTGGACTACTAGCAGTTGCTTTTG

Basic information

species Glycine max
transcript GLYMA20G02380.1
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA20G02380.1 (Glycine max), 3'ss of exon 3
lower sequence: Vv01s0011g01680.t01 (Vitis vinifera), 3'ss of exon 3
gttgatcatggttgttagga-----ttttgcct---cgggttaaatggataaaatttgagacaataataaccagagatgtatttatgttattagttttcctcctcgtagGTTGCAAGCAAAATGAATGAGTTGGCTGGTGATGGTACTAGCACTGCAATTATTTTGGCTCGGGCCATGATTAAGTCTGGACTACTAGCAGTTGCTTTTG
||   ||| |||  ||||       |||| |||   | | |||  |||   |||||||    ||          |  ||||  ||  || || || |   |  |   |||||||||| || |  |||||  |||| |||||||||||||  ||||| || |||||||||||||  ||||| ||||||||  |  | |  || |||||||
gtcattcagggtccttagatgtttcttttacctaaccagtttatttggcataaatttgtttgaacgtcgtttgaatgtgtaccta-attgtttgtatgt-tgttaacagGTTGCAAGTAAGACAAATGATGTGGCAGGTGATGGTACTACGACTGCTATCATTTTGGCTCGGGAAATGATCAAGTCTGGTTTGTTGGTGGTCGCTTTTG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tttgagacaataataaccagagatgtatttatgttattagttttcctcctcgtagGTTGCAAGCAAAATGAATGAGTTGGCTGGTGATGGTACTAGCACTGCAATTATTTTGGCTCGGGCCATGATTAAGTCTGGACTACTAGCAGTTGCTTTTG
          taataac  putative branch site (score: 1)
                                    ttagttttcctcctc  putative PPT
                      atgtatttatgttatt  TA-rich tract