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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tagttatgtgattcacatataaatatagtacagtttgtataacaacacaattattcactttctcaagtattgtcattgaggttttgatatcttttttcagGTGTTGGAGGCTGTGGGTCCTATTATATTTCTATCAACAGACACAAGGAAACTTAGAAATGAGGGATTTTTAAGTCCATATCATCCTCGTTATCCAGACA

Basic information

species Glycine max
transcript GLYMA20G02370.3
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA20G02370.2 (Glycine max), 3'ss of exon 7
lower sequence: Vv01s0011g01630.t01 (Vitis vinifera), 3'ss of exon 6
tagttatgtgattcacatataaata-tagta-cagtttgtataacaacacaat-tattcactttctcaagtattgtcattgaggttttgatatcttttttcagGTGTTGGAGGCTGTGGGTCCTATTATATTTCTATCAACAGACACAAGGAAACTTAGAAATGAGGGATTTTTAAGTCCATATCATCCTCGTTATCCAGACA
 |||| |   | |  ||  ||| || | | |  ||     | |  || | ||  |||| |   | | |   || ||  ||||   ||| |  | | ||  ||||| || |||||||||||||||||||| || ||||| || || ||||||||  | ||||||||||| ||||||||||||| ||||||||| ||||||||||
-agtt-taaaacttccaagtaattaatggcaatagaagagagagaaaaaaaaggtatttatagtgtgactgatagtggttgaaagtttcac-tttgttcccagGTTTTAGAGGCTGTGGGTCCTATTATTTTCCTATCCACGGATACAAGGAAGTTGAGAAATGAGGGTTTTTTAAGTCCATTTCATCCTCGATATCCAGACA


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cacaattattcactttctcaagtattgtcattgaggttttgatatcttttttcagGTGTTGGAGGCTGTGGGTCCTATTATATTTCTATCAACAGACACAAGGAAACTTAGAAATGAGGGATTTTTAAGTCCATATCATCCTCGTTATCCAGACA
                                    ttttgat  putative branch site (score: 4)
                                          tatcttttttc  CT-rich tract
                                    ttttgatatctttttt  TA-rich tract