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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...catttatgtcaattagaacttgcttgtttatttcatgacttttagattttcaattcatgttacctgaactcgtacagtaatgattcatttgtgtgtgcagCTACTTCTTGACTTGATGGTGTTTCGTGAACAAGCTCTGCGACTTATATTGGATCTAAGTAGTACAGTAATTACCTTGTTG

Basic information

species Glycine max
transcript GLYMA20G02370.3
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA20G02370.2 (Glycine max), 3'ss of exon 2
lower sequence: Vv01s0011g01630.t01 (Vitis vinifera), 3'ss of exon 2
catttatgtcaattagaacttg--cttgtttatttcatgacttttagattttcaatt-catgttacctgaactcgtacagtaatgat-tcatttgtgtgtgcagCTACTTCTTGACTTGATGGTGTTTCGTGAACAAGCTCTGCGACTTATATTGGATCTAAGTAGTACAGTAATTACCTTGTTG
   || |     |  |    ||  ||   || | ||   ||   | |  |  |||||   |||| | ||  ||     | ||    | |  ||| ||  | ||||| ||||||||||||||||  ||||| ||||||||| |||||||||||||||||||||| || ||||| ||||||||||| 
---ttcttctggtatgcctctgagctcacttttctcccaacaaattgtataccaattatctgttgcatggtcttagtaaatagctttgttttttatggat-cagCTGCTTCTTGACTTGATGGCATTTCGGGAACAAGCTTTGCGACTTATATTGGATCTAAGCAGCACAGTTATTACCTTGTTA


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

attttcaattcatgttacctgaactcgtacagtaatgattcatttgtgtgtgcagCTACTTCTTGACTTGATGGTGTTTCGTGAACAAGCTCTGCGACTTATATTGGATCTAAGTAGTACAGTAATTACCTTGTTG
                                taatgatt  TA-rich tract