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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CCCCATCAGAATTCTCTTATACTACATGCATTTATGGATCTATTCTGTTCCTTTGTGCGGGTTAACCTTTTCTCTGAAAAGgcaagttaattttccctctatttttcttgaccttttttttttacttatgaaaagctttgatgttttcgaaatgatttttctggtcaactatatatgagtgtaattatttctaaaccaatcttctcataacag

Basic information

species Glycine max
transcript GLYMA20G02370.3
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA20G02370.2 (Glycine max), 5'ss of exon 5
lower sequence: Vv01s0011g01630.t01 (Vitis vinifera), 5'ss of exon 4
CCCCATCAGAATTCTCTTATACTACATGCATTTATGGATCTATTCTGTTCCTTTGTGCGGGTTAACCTTTTCTCTGAAAAGgcaagttaattttccctctatttttcttgaccttttttttttacttatgaaaagctttgatgtt------ttcgaaatgatttttctggtcaac-tatatatgagtgtaattatttctaaaccaatcttctcataacag----------------
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CCTCATCAGAACTCACTCATACTACATGCGTTCATGGATCTCTTTTGTTCCTTTGTCCGTGTTAATCTCTTTTCTGAGAAGGCAAGTCCACTT-CATGCTgtgcttgttccctgtttctccttttttgccaaa-gctttgtggttgagaaattttgactgatttctcctaacaatgtacatatatatgctacatgtgtcaaatttctctaat-acaattgcgtggcttcttttcag