1 5' 3' | 2 5' 3' | 3 5' 3' |
CAACTATTCGAGGTTCATCAACCGTGATAAACCCATCCCTTCCTGGTCAAGCTCTGATGTCGAGGAGTTCATTGCTTCTGATCCTGTTCATGGACCCGTCgtaataattctctcactttatctacatttatgcctttgatgatgttgtttaagcttatttattgatgctctttgccttgtttttttgaatgattacattg...
species | Glycine max |
transcript | GLYMA20G02250.4 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: GCTCTGATGTCGAGGAGTTCATTGCTTCTGATCCTGTTCATGGACCCGTC CTGAAAAGTGCTAGAGAAGCAGTGCAATTTGGCCTCACAGGAAGTGCTTTGEST: gi|192298857|gb|FG987602.1|FG987602
genomic: GCTCTGATGTCGAGGAGTTCATTGCTTCTGATCCTGTTCATGGACCCGTCgtaataattc ... cccatttcagCTGAAAAGTGCTAGAGAAGCAGTGCAATTTGGCCTCACAGGAAGTGCTTTG
EST: GCTCTGATGTCGAGGAGTTCATTGCTTCTGATCTTGTTCATGGACCCGTC CTGAAAAGTGCTAGAGAAGCAGTGCAATTTGGCCTCACAGGAAGTGCTTTGEST: gi|151404729|gb|EV274543.1|EV274543
genomic: GCTCTGATGTCGAGGAGTTCATTGCTTCTGATCCTGTTCATGGACCCGTCgtaataattc ... cccatttcagCTGAAAAGTGCTAGAGAAGCAGTGCAATTTGGCCTCACAGGAAGTGCTTTG
EST: GCTCTGATGTCGAGGAGTTCATTGCTTCTGATCCTGTTCATGGACCCGTC CTGAAAAGTGCTAGAGAAGCAGTGCAATTTGGCCTCACAGGAAGTGCTTTGEST: gi|298168372|gb|HO009302.1|HO009302
genomic: GCTCTGATGTCGAGGAGTTCATTGCTTCTGATCCTGTTCATGGACCCGTCgtaataattc ... cccatttcagCTGAAAAGTGCTAGAGAAGCAGTGCAATTTGGCCTCACAGGAAGTGCTTTG
EST: GCTCTGATGTCGAGGAGTTCATTGCTTCTGATCCTGTTCATGGACCCGTC CTGAAAAGTGCTAGAGAAGCAGTGCAATTTGGCCTCACAGGAAGTGCTTTGEST: gi|151411906|gb|EV281717.1|EV281717
genomic: GCTCTGATGTCGAGGAGTTCATTGCTTCTGATCCTGTTCATGGACCCGTCgtaataattc ... cccatttcagCTGAAAAGTGCTAGAGAAGCAGTGCAATTTGGCCTCACAGGAAGTGCTTTG
EST: GCTCTGATGTCGAGGAGTTCATTGCTTCTGATCCTGTTCATGGACCCGTC CTGAAAAGTGTTAGAGAAGCAGTGCAATTTGGCCTCACAGGAAGTGCTTTGEST: gi|192297704|gb|FG989594.1|FG989594
genomic: GCTCTGATGTCGAGGAGTTCATTGCTTCTGATCCTGTTCATGGACCCGTCgtaataattc ... cccatttcagCTGAAAAGTGCTAGAGAAGCAGTGCAATTTGGCCTCACAGGAAGTGCTTTG
EST: GCTCTGATGTCGAGGAGTTCATTGCTTCTGATCCTGTTCATGGACCCGTC CTGAAAAGTGCTAGAGAAGCAGTGCAATTTGGCCTCACAGGAAGTGCTTTGEST: gi|31311039|gb|CD396242.1|CD396242
genomic: GCTCTGATGTCGAGGAGTTCATTGCTTCTGATCCTGTTCATGGACCCGTCgtaataattc ... cccatttcagCTGAAAAGTGCTAGAGAAGCAGTGCAATTTGGCCTCACAGGAAGTGCTTTG
EST: GCTCTGATGTCGAGGAGTTCATTGCTTCTGATCCTGTTCATGGACCCGTC CTGAAAAGTGCTAGAGAAGCAGTGCAATTTGGCCTCACAGGAAGTGCTTTGEST: gi|151406805|gb|EV276620.1|EV276620
genomic: GCTCTGATGTCGAGGAGTTCATTGCTTCTGATCCTGTTCATGGACCCGTCgtaataattc ... cccatttcagCTGAAAAGTGCTAGAGAAGCAGTGCAATTTGGCCTCACAGGAAGTGCTTTG
EST: GCTCTGATGTCGAGGAGTTCATTGCTTCTGATCCTGTTCATGGACCCGTC CTGAAAAGTGCTAGAGAAGCAGTGCAATTTGGCCTCACAGGAAGTGCTTTGEST: gi|7030299|gb|AW460082.1|AW460082
genomic: GCTCTGATGTCGAGGAGTTCATTGCTTCTGATCCTGTTCATGGACCCGTCgtaataattc ... cccatttcagCTGAAAAGTGCTAGAGAAGCAGTGCAATTTGGCCTCACAGGAAGTGCTTTG
EST: GCTCTGATGTCGAGGAGTTCATTGCTTCTGATCCTGTTCATGGACCCGTC CTGAAAAGTGCTAGAGAAGCAGTGCAATTTGGCCTCACAGGAAGTGCTTTGEST: gi|38191065|gb|CF920271.1|CF920271
genomic: GCTCTGATGTCGAGGAGTTCATTGCTTCTGATCCTGTTCATGGACCCGTCgtaataattc ... cccatttcagCTGAAAAGTGCTAGAGAAGCAGTGCAATTTGGCCTCACAGGAAGTGCTTTG
EST: GCTCTGATGTCGAGGAGTTCATTGCTTCTGATCCTGTTCATGGACCCGTC CTGAAAAGTGCTAGAGAAGCAGTGCAATTTGGCCTCACAGGAAGTGCTTTGEST: gi|151410280|gb|EV280095.1|EV280095
genomic: GCTCTGATGTCGAGGAGTTCATTGCTTCTGATCCTGTTCATGGACCCGTCgtaataattc ... cccatttcagCTGAAAAGTGCTAGAGAAGCAGTGCAATTTGGCCTCACAGGAAGTGCTTTG
EST: GCTCTGATGTCGAGGAGTTCATTGCTTCTGATCCTGTTCATGGACCCGTC CTGAAAAGTGCTAGAGAAGCAGTGCAACTTGGCCTCACAGGAAGTGCTTTGEST: gi|6502166|gb|AW203539.1|AW203539
genomic: GCTCTGATGTCGAGGAGTTCATTGCTTCTGATCCTGTTCATGGACCCGTCgtaataattc ... cccatttcagCTGAAAAGTGCTAGAGAAGCAGTGCAATTTGGCCTCACAGGAAGTGCTTTG
EST: GCTCTGATGTCGAGGAGTTCATTGCTTCTGATCCTGTTCATGGACCCGTC CTGAAAAGTGCTAGAGAAGCAGTGCAATTTGGCCTCACAGGAAGTGCTTTGEST: gi|58024151|gb|CX710892.1|CX710892
genomic: GCTCTGATGTCGAGGAGTTCATTGCTTCTGATCCTGTTCATGGACCCGTCgtaataattc ... cccatttcagCTGAAAAGTGCTAGAGAAGCAGTGCAATTTGGCCTCACAGGAAGTGCTTTG
EST: GCTCTGATGTCGAGGAGTTCATTGCTTCTGATCCTGTTCATGGACCCGTC CTGAAAAGTGCTAGAGAAGCAGTGCAATTTGGCCTCACAGGAAGTGCTTTGEST: gi|9984033|gb|BE658141.1|BE658141
genomic: GCTCTGATGTCGAGGAGTTCATTGCTTCTGATCCTGTTCATGGACCCGTCgtaataattc ... cccatttcagCTGAAAAGTGCTAGAGAAGCAGTGCAATTTGGCCTCACAGGAAGTGCTTTG
EST: GCTCTGATGTCGAGGAGTTCATTGCTTCTGATCCTGTTCATGGACCCGTC CTGAAAAGTGCTAGAGAAGCAGTGCAATTTGGCCTCACAGGAAGTGCTTTGEST: gi|4303689|gb|AI443512.1|AI443512
genomic: GCTCTGATGTCGAGGAGTTCATTGCTTCTGATCCTGTTCATGGACCCGTCgtaataattc ... cccatttcagCTGAAAAGTGCTAGAGAAGCAGTGCAATTTGGCCTCACAGGAAGTGCTTTG
EST: GCTCTGATGTCGAGGAGTTCATTGCTTCTGATCCTGTTCATGGACCCGTC CTGAAAAGTGCTAGAGAAGCAGTGCAATTTGGCCTCACAGGAAGTGCTTTGEST: gi|21889812|gb|BQ743025.1|BQ743025
genomic: GCTCTGATGTCGAGGAGTTCATTGCTTCTGATCCTGTTCATGGACCCGTCgtaataattc ... cccatttcagCTGAAAAGTGCTAGAGAAGCAGTGCAATTTGGCCTCACAGGAAGTGCTTTG
EST: TCTCTGATGTCGAGGAGTTCATTGCTTCTGATCCTGTTCATGGACCCGTC CTGAAAAGTGCTAGAGAAGCAGTGCAATTTGGCCTCACAGGAAGTGCTTTGEST: gi|6847047|gb|AW349337.1|AW349337
genomic: GCTCTGATGTCGAGGAGTTCATTGCTTCTGATCCTGTTCATGGACCCGTCgtaataattc ... cccatttcagCTGAAAAGTGCTAGAGAAGCAGTGCAATTTGGCCTCACAGGAAGTGCTTTG
EST: GCTCTGATGTCGAGGAGTTCATTGCTTCTGATCCTGTTCATGGACCCGTC CTGAAAAGTGCTAGAGAAGCAGTGCAATTTGGCCTCACAGGAAGTGCTTTGEST: gi|192328251|gb|FK020470.1|FK020470
genomic: GCTCTGATGTCGAGGAGTTCATTGCTTCTGATCCTGTTCATGGACCCGTCgtaataattc ... cccatttcagCTGAAAAGTGCTAGAGAAGCAGTGCAATTTGGCCTCACAGGAAGTGCTTTG
EST: GCTCTGATGTCGAGGAGTTCATTGCTTCTGATCCTGTTCATGGACCCGTC CTGAAAAGTGCTAGAGAAGCAGTGCAATTTGGCCTCACAGGAAGTGCTTTGEST: gi|16347857|gb|BI973452.1|BI973452
genomic: GCTCTGATGTCGAGGAGTTCATTGCTTCTGATCCTGTTCATGGACCCGTCgtaataattc ... cccatttcagCTGAAAAGTGCTAGAGAAGCAGTGCAATTTGGCCTCACAGGAAGTGCTTTG
EST: GCTCTGATGTCGAGGAGTTCATTGCTTCTGATCCTGTTCATGGACCCGTC CTGAAAAGTGCTAGAGAAGCAGTGCAATTTGGCCTCACAGGAAGTGCTTTGEST: gi|151405553|gb|EV275367.1|EV275367
genomic: GCTCTGATGTCGAGGAGTTCATTGCTTCTGATCCTGTTCATGGACCCGTCgtaataattc ... cccatttcagCTGAAAAGTGCTAGAGAAGCAGTGCAATTTGGCCTCACAGGAAGTGCTTTG
EST: GCTCTGATGTCGAGGAGTTCATTGCTTCTGATCCTGTTCATGGACCCGTC CTGAAAAGTGCTAGAGAAGCAGTGCAATTTGGCCTCACAGGAAGTGCTTTGEST: gi|8826149|gb|BE209809.1|BE209809
genomic: GCTCTGATGTCGAGGAGTTCATTGCTTCTGATCCTGTTCATGGACCCGTCgtaataattc ... cccatttcagCTGAAAAGTGCTAGAGAAGCAGTGCAATTTGGCCTCACAGGAAGTGCTTTG
EST: GCTCTGATGTCGAGGAGTTCATTGCTTCTGATCCTGTTCATGGACCCGTC CTGAAAAGTGCTAGAGAAGCAGTGCAATTTGGCCTCACAGGAAGTGCTTTGEST: gi|151407497|gb|EV277312.1|EV277312
genomic: GCTCTGATGTCGAGGAGTTCATTGCTTCTGATCCTGTTCATGGACCCGTCgtaataattc ... cccatttcagCTGAAAAGTGCTAGAGAAGCAGTGCAATTTGGCCTCACAGGAAGTGCTTTG
EST: GCTCTGATGTCGAGGAGTTCATTGCTTCTGATCCTGTTCATGGACCCGTC CTGAAAAGTGCTAGAGAAGCAGTGCAATTTGGCCTCACAGGAAGTGCTTTGEST: gi|58023963|gb|CX710704.1|CX710704
genomic: GCTCTGATGTCGAGGAGTTCATTGCTTCTGATCCTGTTCATGGACCCGTCgtaataattc ... cccatttcagCTGAAAAGTGCTAGAGAAGCAGTGCAATTTGGCCTCACAGGAAGTGCTTTG
EST: GCTCTGATGTCGAGGAGTTCATTGCTTCTGATCCTGTTCATGGACCCGTC CTGAAAAGTGCTAGAGAAGCAGTGCAATTTGGCCTCACAGGAAGTGCTTTGEST: gi|192300181|gb|FG989303.1|FG989303
genomic: GCTCTGATGTCGAGGAGTTCATTGCTTCTGATCCTGTTCATGGACCCGTCgtaataattc ... cccatttcagCTGAAAAGTGCTAGAGAAGCAGTGCAATTTGGCCTCACAGGAAGTGCTTTG
EST: GCTCTGATGTCGAGGAGTTCATTGCTTCTGATCCTGTTCATGGACCCGTC CTGAAAAGTGCTAGAGAAGCAGTGCAATTTGGCCTCACAGGAAGTGCTTTGEST: gi|298177452|gb|HO023585.1|HO023585
genomic: GCTCTGATGTCGAGGAGTTCATTGCTTCTGATCCTGTTCATGGACCCGTCgtaataattc ... cccatttcagCTGAAAAGTGCTAGAGAAGCAGTGCAATTTGGCCTCACAGGAAGTGCTTTG
EST: GCTCTGATGTCGAGGAGTTCATTGCTTCTGATCCTGTTCATGGACCCGTC CTGAAAAGTGCTAGAGAAGCAGTGCAATTTGGCCTCACAGGAAGTGCTTTGEST: gi|151400953|gb|EV270767.1|EV270767
genomic: GCTCTGATGTCGAGGAGTTCATTGCTTCTGATCCTGTTCATGGACCCGTCgtaataattc ... cccatttcagCTGAAAAGTGCTAGAGAAGCAGTGCAATTTGGCCTCACAGGAAGTGCTTTG
EST: GCTCTGATGTCGAGGAGTTCATTGCTTCTGATCCTGTTCATGGACCCGTC CTGAAAAGTGCTAGAGAAGCAGTGCAATTTGGCCTCACAGGAAGTGCTTTGEST: gi|58016067|gb|CX702809.1|CX702809
genomic: GCTCTGATGTCGAGGAGTTCATTGCTTCTGATCCTGTTCATGGACCCGTCgtaataattc ... cccatttcagCTGAAAAGTGCTAGAGAAGCAGTGCAATTTGGCCTCACAGGAAGTGCTTTG
EST: GCTCTGATGTCGAGGAGTTCATTGCTTCTGATCCTGTTCATGGACCCGTC CTGAAAAGTGCTAGAGAAGCAGTGCAATTTGGCCTCACAGGAAGTGCTTTGEST: gi|151411160|gb|EV280971.1|EV280971
genomic: GCTCTGATGTCGAGGAGTTCATTGCTTCTGATCCTGTTCATGGACCCGTCgtaataattc ... cccatttcagCTGAAAAGTGCTAGAGAAGCAGTGCAATTTGGCCTCACAGGAAGTGCTTTG
EST: GCTCTGATGTCGAGGAGTTCATTGCTTCTGATCCTGTTCATGGACCCGTC CTGAAAAGTGCTAGAGAAGCAGTGCAATTTGGCCTCACAGGAAGTGCTTTGEST: gi|151409676|gb|EV279484.1|EV279484
genomic: GCTCTGATGTCGAGGAGTTCATTGCTTCTGATCCTGTTCATGGACCCGTCgtaataattc ... cccatttcagCTGAAAAGTGCTAGAGAAGCAGTGCAATTTGGCCTCACAGGAAGTGCTTTG
EST: GCTCTGATGTCGAGGAGTTCATTGCTTCTGATCCTGTTCATGGACCCGTC CTGAAAAGTGCTAGAGAAGCAGTGCAATTTGGCCTCACAGGAAGTGCTTTGEST: gi|214006862|gb|DB988369.1|DB988369
genomic: GCTCTGATGTCGAGGAGTTCATTGCTTCTGATCCTGTTCATGGACCCGTCgtaataattc ... cccatttcagCTGAAAAGTGCTAGAGAAGCAGTGCAATTTGGCCTCACAGGAAGTGCTTTG
EST: GCTCTGATGTCGACGAGTTCATTGCTTCTGATCCTGTTCGCACACCCATC CTGAAAAGTGCTAGAGAAGCAGTGCAATTTGGCCTCAAAGGAAGTGCTTTGEST: gi|192305829|gb|FG995421.1|FG995421
genomic: GCTCTGATGTCGAGGAGTTCATTGCTTCTGATCCTGTTCATGGACCCGTCgtaataattc ... cccatttcagCTGAAAAGTGCTAGAGAAGCAGTGCAATTTGGCCTCACAGGAAGTGCTTTG
EST: GCTCTGATGTCGAGGAGTTCATTGCTTCTGATCCTGTTCATGGACCCGTC CTGAAAAGTGCTAGAGAAGCAGTGCAATTTGGCCTCACAGGAAGTGCTTTGEST: gi|7234337|gb|AW569676.1|AW569676
genomic: GCTCTGATGTCGAGGAGTTCATTGCTTCTGATCCTGTTCATGGACCCGTCgtaataattc ... cccatttcagCTGAAAAGTGCTAGAGAAGCAGTGCAATTTGGCCTCACAGGAAGTGCTTTG
EST: GCTCTGATGTCGAGGAGTTCATTGCTTCTGATCCTGTTCATGGACCCGTC CTGAAAAGTGCTAGAGAAGCAGTGCAATTTGGCCTCACAGGAAGTGCTTTGEST: gi|18039018|gb|BM307312.1|BM307312
genomic: GCTCTGATGTCGAGGAGTTCATTGCTTCTGATCCTGTTCATGGACCCGTCgtaataattc ... cccatttcagCTGAAAAGTGCTAGAGAAGCAGTGCAATTTGGCCTCACAGGAAGTGCTTTG
EST: GCTCTGATGTCGAGGAGTTCATTGCTTCTGATCCTGTTCATGGACCCGTC CTGAAAAGTGCTAGAGAAGCAGTGCAATTTGGCCTCACAGGAAGTGCTTTGEST: gi|58023111|gb|CX709852.1|CX709852
genomic: GCTCTGATGTCGAGGAGTTCATTGCTTCTGATCCTGTTCATGGACCCGTCgtaataattc ... cccatttcagCTGAAAAGTGCTAGAGAAGCAGTGCAATTTGGCCTCACAGGAAGTGCTTTG
EST: GCTCTGATGTCGAGGAGTTCATTGCTTCTGATCCTGTTCATGGACCCGTC CTGAAAAGTGCTAGAGAAGCAGTGCAATTTGGCCTCACAGGAAGTGCTTTGEST: gi|298199060|gb|HO042423.1|HO042423
genomic: GCTCTGATGTCGAGGAGTTCATTGCTTCTGATCCTGTTCATGGACCCGTCgtaataattc ... cccatttcagCTGAAAAGTGCTAGAGAAGCAGTGCAATTTGGCCTCACAGGAAGTGCTTTG
EST: GCTCTGATGTCGAGGAGTTCATTGCTTCTGATCCTGTTCATGGACCCGTC CTGAAAAGTGCTAGAGAAGCAGTGCAATTTGGCCTCACAGGAAGTGCTTTGEST: gi|151399940|gb|EV269811.1|EV269811
genomic: GCTCTGATGTCGAGGAGTTCATTGCTTCTGATCCTGTTCATGGACCCGTCgtaataattc ... cccatttcagCTGAAAAGTGCTAGAGAAGCAGTGCAATTTGGCCTCACAGGAAGTGCTTTG
EST: GCTCTGATGTCGAGGAGTTCATTGCTTCTGATCCTGTTCATGGACCCGTC CTGAAAAGTGCTAGAGAAGCAGTGCAATTTGGCCTCACAGGAAGTGCTTTGEST: gi|192317711|gb|FK008603.1|FK008603
genomic: GCTCTGATGTCGAGGAGTTCATTGCTTCTGATCCTGTTCATGGACCCGTCgtaataattc ... cccatttcagCTGAAAAGTGCTAGAGAAGCAGTGCAATTTGGCCTCACAGGAAGTGCTTTG
EST: GCTCTGATGTCGAGGAGTTCATTGCTTCTGATCCTGTTCATGGACCCGTC CTGAAAAGTGCTAGAGAAGCAGTGCAATTTGGCCTCACAGGAAGTGCTTTGEST: gi|18040157|gb|BM308451.1|BM308451
genomic: GCTCTGATGTCGAGGAGTTCATTGCTTCTGATCCTGTTCATGGACCCGTCgtaataattc ... cccatttcagCTGAAAAGTGCTAGAGAAGCAGTGCAATTTGGCCTCACAGGAAGTGCTTTG
EST: GCTCTGATGTCGAGGAGTTCATTGCTTCTGATCCTGTTCATGGACCCGTC CTGAAAAGTGCTAGAGAAGCAGTGCAATTTGGCCTCACAGGAAGTGCTTTGEST: gi|151407348|gb|EV277163.1|EV277163
genomic: GCTCTGATGTCGAGGAGTTCATTGCTTCTGATCCTGTTCATGGACCCGTCgtaataattc ... cccatttcagCTGAAAAGTGCTAGAGAAGCAGTGCAATTTGGCCTCACAGGAAGTGCTTTG
EST: GCTCTGATGTCGAGGAGTTCATTGCTTCTGATCCTGTTCATGGACCCGTC CTGAAAAGTGCTAGAGAAGCAGTGCAATTTGGCCTCACAGGAAGTGCTTTGEST: gi|254333478|gb|GR848396.1|GR848396
genomic: GCTCTGATGTCGAGGAGTTCATTGCTTCTGATCCTGTTCATGGACCCGTCgtaataattc ... cccatttcagCTGAAAAGTGCTAGAGAAGCAGTGCAATTTGGCCTCACAGGAAGTGCTTTG
EST: GCTCTGATGTCGAGGAGTTCATTGCTTCTGATCCTGTTCATGGACCCGTC CTGAAAAGTGCTAGAGAAGCAGTGCAATTTGGCCTCACAGGAAGTGCTTTG
genomic: GCTCTGATGTCGAGGAGTTCATTGCTTCTGATCCTGTTCATGGACCCGTCgtaataattc ... cccatttcagCTGAAAAGTGCTAGAGAAGCAGTGCAATTTGGCCTCACAGGAAGTGCTTTG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CAACTATTCGAGGTTCATCAACCGTGATAAACCCATCCCTTCCTGGTCAAGCTCTGATGTCGAGGAGTTCATTGCTTCTGATCCTGTTCATGGACCCGTCgtaataattctctcactttatctacatttatgcctttgatgatgttgtttaagcttatttattgatgctctttgccttgtttttttgaatgattacattg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA