Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AAATCGTAAAACCTAAATAAATACATCACTGCCTTCAGAAAACGACTGCGCCTAGCTTCTAGCCACCCTTTAATCTTCGTCAACGTTACTTTTCCACCTCgtacggtaacacacgcttcttcttcttcttcttcttcttcttcaaattggtacttggattctgtgtttgcttaattgaacctctgatccatgaatctgaa...

Basic information

species Glycine max
transcript GLYMA20G02250.4
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|151404729|gb|EV274543.1|EV274543
EST:     TTTAATCTTCGTCAACGTTACTTTTCCACCTCGTAC                      
genomic: TTTAATCTTCGTCAACGTTACTTTTCCA-C-C-T-Cgtacggtaac ... cttgatt
EST: gi|151404729|gb|EV274543.1|EV274543
EST:     TTTAATCTTCGTCAACGTTACTTTTCCACCTCGTAC                      
genomic: TTTAATCTTCGTCAACGTTACTTTTCCA-C-C-T-Cgtacggtaac ... cttgatt
EST: gi|298168372|gb|HO009302.1|HO009302
EST:     CAACGTTACTTTTCAATCTCGTGCG                         TGATTAATCTTTGTGGGTGATTGAATTTGGCTGGTTACTGCAGAGGGATT
genomic: CAACGTTACTTTTCCA-C-C-T-C-gtacggtaac ... cttgattcagTGATTAATCTTTGTGGGTGATTGAATTTGGCTGGTTACTGCAGAGGGATT
EST: gi|298168372|gb|HO009302.1|HO009302
EST:     CAACGTTACTTTTCAATCTCGTGCG                         TGATTAATCTTTGTGGGTGATTGAATTTGGCTGGTTACTGCAGAGGGATT
genomic: CAACGTTACTTTTCCA-C-C-T-C-gtacggtaac ... cttgattcagTGATTAATCTTTGTGGGTGATTGAATTTGGCTGGTTACTGCAGAGGGATT
EST: gi|192328251|gb|FK020470.1|FK020470
EST:     CCTAGCTTCTAGCCACCCTTTAATCTTCGTCAACGTTACTTTTCCACCTCGTAC                      
genomic: CCTAGCTTCTAGCCACCCTTTAATCTTCGTCAACGTTACTTTTCCA-C-C-T-Cgtacggtaac ... cttgatt
EST: gi|192328251|gb|FK020470.1|FK020470
EST:     CCTAGCTTCTAGCCACCCTTTAATCTTCGTCAACGTTACTTTTCCACCTCGTAC                      
genomic: CCTAGCTTCTAGCCACCCTTTAATCTTCGTCAACGTTACTTTTCCA-C-C-T-Cgtacggtaac ... cttgatt
EST: gi|298177452|gb|HO023585.1|HO023585
EST:     CCTAGCTTCTAGCCACCCTTTAATCTTCGTCAACGTTACTTTTCAACCTC                         TGATTAATCTTTGTGGGTGATTGAATTTGGCTGGTTACTGCAGAGGGATTC
genomic: CCTAGCTTCTAGCCACCCTTTAATCTTCGTCAACGTTACTTTTCCACCTCgtacggtaac ... cttgattcagTGATTAATCTTTGTGGGTGATTGAATTTGGCTGGTTACTGCAGAGGGATTC
EST: gi|151411160|gb|EV280971.1|EV280971
EST:     CCTAGCTTCTAGCCACCCTTTAATCTTCGTCAACGTTACTTTTCCACCTC                         TGATTAATCTTTGTGGGTGATTGAATTTGGCCGGTTACTGCAGAGGGATTC
genomic: CCTAGCTTCTAGCCACCCTTTAATCTTCGTCAACGTTACTTTTCCACCTCgtacggtaac ... cttgattcagTGATTAATCTTTGTGGGTGATTGAATTTGGCTGGTTACTGCAGAGGGATTC
EST: gi|151409676|gb|EV279484.1|EV279484
EST:     CCTAGCTTCTAGCCACCCTTTAATCTTCGTCAACGTTACTTTTCCACCTCGTAC                      
genomic: CCTAGCTTCTAGCCACCCTTTAATCTTCGTCAACGTTACTTTTCCA-C-C-T-Cgtacggtaac ... cttgatt
EST: gi|151409676|gb|EV279484.1|EV279484
EST:     CCTAGCTTCTAGCCACCCTTTAATCTTCGTCAACGTTACTTTTCCACCTCGTAC                      
genomic: CCTAGCTTCTAGCCACCCTTTAATCTTCGTCAACGTTACTTTTCCA-C-C-T-Cgtacggtaac ... cttgatt
EST: gi|298199060|gb|HO042423.1|HO042423
EST:     CCTAGCTTCTAGCCACCCTTTAATCTTCGTCAACGTTACTTTTCAACCTC                         TGATTAATCTTTGTGGGTGATTGAATTTGGCTGGTTACTGCAGAGGGATTC
genomic: CCTAGCTTCTAGCCACCCTTTAATCTTCGTCAACGTTACTTTTCCACCTCgtacggtaac ... cttgattcagTGATTAATCTTTGTGGGTGATTGAATTTGGCTGGTTACTGCAGAGGGATTC
EST: gi|18040157|gb|BM308451.1|BM308451
EST:     CCTAGCTTCTAGCCACCCTTTAATCTTCGTCAACGTTACTTTTCCACCTCGTAC                      
genomic: CCTAGCTTCTAGCCACCCTTTAATCTTCGTCAACGTTACTTTTCCA-C-C-T-Cgtacggtaac ... cttgatt
EST: gi|18040157|gb|BM308451.1|BM308451
EST:     CCTAGCTTCTAGCCACCCTTTAATCTTCGTCAACGTTACTTTTCCACCTCGTAC                      
genomic: CCTAGCTTCTAGCCACCCTTTAATCTTCGTCAACGTTACTTTTCCA-C-C-T-Cgtacggtaac ... cttgatt