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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCAGCTCTCAAAAACTACAAAGTGGATGGAAATAAGGAAATGATGGCAATTGGGTTTATGAATGTTGTTGGCTCCTTCACTTCCTGCTATGTTACAACAGgtttttctttgtgacctaaaaaccttttcaaaaggctttcctgatggctaatgaaacaaaagacttccacatatttaaactgtgaaattcag

Basic information

species Glycine max
transcript GLYMA20G02080.2
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA20G02080.1 (Glycine max), 5'ss of exon 8
lower sequence: GRMZM2G395114_T01 (Zea mays), 5'ss of exon 7
GCAGCTCTCAAAAACTACAAAGTGGATGGAAATAAGGAAATGATGGCAATTGGGTTTATGAATGTTGTTGGCTCCTTCACTTCCTGCTATGTTACAACAGgtttttctttgtgacctaaaaaccttttca--aaaggctttcctgatggcta-atgaaacaaaagacttccacatatttaaactgtgaaattcag-------
||  | |||||  ||||| |  | |||||||| ||||| |||||||| || ||||| |||||||||||||| |||| ||| || ||||| || |||||||||    || |  || | |  || ||||||    |     || ||     | | |  || | | ||     ||   | | |   |       || |       
GCCTCACTCAAGGACTACCAGATAGATGGAAACAAGGAGATGATGGCCATAGGGTTGATGAATGTTGTTGGGTCCTGCACATCATGCTACGTAACAACAGgta---ctgtccgatccactaatcttttcgctgagtaaatttctaggatcaataccaagctatagctggacagggaataatgatcatcggctctgtacgtag

upper sequence: GLYMA20G02080.1 (Glycine max), 5'ss of exon 8
lower sequence: Vv01s0011g04980.t01 (Vitis vinifera), 5'ss of exon 8
GCAGCTCTCAAAAACTACAAAGTGGATGGAAATAAGGAAATGATGGCAATTGGGTTTATGAATGTTGTTGGCTCCTTCACTTCCTGCTATGTTACAACAGgtttttctttgtgacctaaaaaccttttcaaaaggctttcctgatggctaatgaaacaaaagacttccacatatttaaactgtgaaattcag
|| ||||| ||   ||||||||||||||| || |||||||||||||| |||||| | |||||  ||||||||||||  ||||||||||| || ||||||||||         |   ||  |    |  |||      || ||||||   | | |||| |     ||| |   | | ||  |   |  | |||
GCTGCTCTGAAGGGCTACAAAGTGGATGGGAACAAGGAAATGATGGCGATTGGGCTGATGAACATTGTTGGCTCCTCTACTTCCTGCTACGTCACAACAGgtt-----caaagcattacgagagatcccaa------ttgctgatgcagagttaaaccatgagtttcta---actgaagtttaaatttgcag