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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttttgtcaagttctcactctgcctcttttctttttttgttacaaagtacaacacttatattcttcattggagacaatctgctcgaacttgttctcgcataaaaaatgttcacccatatttttaacttggttttcttattcaactattgacttttgtcattcagGGAATTAGTTATGCTAAGCTTGCAAGTCTTCCTCCAATTGTTGGACTTT

Basic information

species Glycine max
transcript GLYMA20G02080.2
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|213604827|gb|DB960536.1|DB960536
EST:     AATCTGACCTTGTTTCTGGCCTCACTATTGCTGGCTTGGCCATCCCGCAG                         GGAATTAGTTATGCTAAGCTTGCAAGTCTTCCTCCAATTGTTGGACTTT
genomic: AATCTGACCTTGTTTCTGGCCTCACTATTGCTAGCTTGGCCATCCCGCAGgttttgtcaa ... tgtcattcagGGAATTAGTTATGCTAAGCTTGCAAGTCTTCCTCCAATTGTTGGACTTT






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tcacccatatttttaacttggttttcttattcaactattgacttttgtcattcagGGAATTAGTTATGCTAAGCTTGCAAGTCTTCCTCCAATTGTTGGACTTT
                                   tattgac  putative branch site (score: 2)
                                         cttttgtc  CT-rich tract
      atatttttaactt  TA-rich tract