Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AAAACTATTCTGGGTCTCAGCTGGAGCTCCTCTTATGTGTGTCATCATCTCTACCCTCTTGGTTTTTGCAATTAAGGCTCAAAATCATGGCATCAGTGTGgtaagttacggttcccacccaactcttactatttgcgtatgaaatccacattagtctagcactgacaattttttagccacaaatcattatcagcttaattactaaacaaaggtgtttctgtttgatgatgttgttgctag

Basic information

species Glycine max
transcript GLYMA20G02080.2
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA20G02080.1 (Glycine max), 5'ss of exon 6
lower sequence: Vv01s0011g04980.t01 (Vitis vinifera), 5'ss of exon 6
AAAACTATTCTGGGTCTCAGCTGGAGCTCCTCTTATGTGTGTCATCATCTCTACCCTCTTGGTTTTTGCAATTAAGGCTCAAAATCATGGCATCAGTGTGgtaagttacggttcccacccaactcttactatttgcgtatgaa-atccacattagtctagcactgacaattttttagccacaaatcattatcagcttaattactaaacaaaggtgtttctgtttgatgatgttgttgctag
||| || |||||||||||||| ||||||||||||   | |||||||||||| ||||| |||||||| ||| | || |||||| |||||||||||||  | |||||||    |||  | |   || | ||||  ||   || |  ||   ||    || | |     |    ||| |   |  | |  ||||  |  |  | |  |                                    
AAATCTGTTCTGGGTCTCAGCCGGAGCTCCTCTTGCTTCTGTCATCATCTCGACCCTATTGGTTTTCGCATTCAAAGCTCAACATCATGGCATCAGCATAgtaagtt----ttctgatcggtctgtcactaagtggtaattaccatatgcagctctcaatcctcatcctcctttcactgattactttttatgggtctg-tcatcag-----------------------------------