Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTGCTCACTTACTCTGCTACCCTGGGGCATTTAACATGACAACTAGACCATTACATTGGGAGTTATTgtagagggcaaggtataatggatacaacataatgaaacattcaacaacctgcaacacatgttgtactagtgttttgtttaaattttataaccctatctag...

Basic information

species Glycine max
transcript GLYMA20G02020.1
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA20G02020.1 (Glycine max), 5'ss of exon 5
lower sequence: AT5G12040.2 (Arabidopsis thaliana), 5'ss of exon 6
GTGCTCACTTACTCTGCTACCCTGGGGCATTTAACATGACAACTAGACCATTACATTGGGAGTTATTgtagagggcaaggtataatgga-----tacaacataatgaaacattcaacaacctgcaacacatgttgtactagtgttttgtttaaattttataaccctatctag-
| ||||| || || |||||||| || || ||||||||||||||| ||||||| |||||||| ||| |  | ||||| |||||| ||  |     ||| |||| | ||     |   |    |  | ||   ||   |  |   |  |  |  |  | | |    | || |   
GGGCTCATTTGCTGTGCTACCCGGGAGCCTTTAACATGACAACTGGACCATTGCATTGGGAATTACTACAAAGGGCCAGgtatgattcacagtctactacattacgactttcttggcttatttaatcatgggtaa-atcacaatgctcatcgatctgttttgttccatttcag

upper sequence: GLYMA20G02020.1 (Glycine max), 5'ss of exon 5
lower sequence: Vv04s0008g01690.t01 (Vitis vinifera), 5'ss of exon 6
GTGCTCACTTACTCTGCTACCCTGGGGCATTTAACATGACAACTAGACCATTACATTGGGAGTTATTgtagagggcaaggta-taatggatacaacataatgaaacattcaacaacctgcaacaca----------tgttgtactagtgttttgtttaaattttataaccctatctag-
| |||||| |  | ||||| |||||||||||||||||||||||| ||||||| ||||||||||||||| | ||||||||||| |||   ||   |  | |||| | ||| || |   |   ||| |          |||  |||||     |    | |     |  | |  | || | 
GCGCTCACCTGATTTGCTATCCTGGGGCATTTAACATGACAACTGGACCATTGCATTGGGAGTTATTGCAAAGGGCAAGgtaataaaatattttagtttatgatatattaaatagtttttgacataccaatatccttgtcatactaacaaatcacctgagaggcaacaactgaactgga