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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtcagtccattttccttctttttaggatcacacttaagggaaggattgctaacttgttttgttttgtcttgtcagGAAATTTGGAACAGTCCTTATTCCAATGATAGTTTTTCTGTCTACGCTGAGGATATTGACGCCGGTGCTTCTCCTTCCACTGCCATGCTATCTGAACTCT

Basic information

species Glycine max
transcript GLYMA20G02020.1
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA20G02020.1 (Glycine max), 3'ss of exon 1
lower sequence: AT5G12040.2 (Arabidopsis thaliana), 3'ss of exon 2
--------------------------------------------gtcagtcc-attttccttctttttagg---atcacacttaagggaaggattgctaacttgttttgtttt------------------------gtcttgt--cagGAAATTTGGAACAGTCCTTATTCCAATGATAGTTTTTCTGTCTACGCTGAGGATATTGACGCCGGTG------CTTCTCCTTCCACTGCCATGCTATCTGAACTCT
                                             ||| | | | | | ||  |  | |      | | | |||    ||| ||     | | || | || |                         |  ||||  |||||||||||||||||||| |||||||||||||||||| | || || || ||||| ||||| || ||||      |||||||||| || || ||||| ||||      
gtgagtttttcttctttgtatcttagctcatagctctttgtgagttcaattctaatgttctgttgctcaaatgtgtaaaatttacaaaaagtatgagctagtggtatcgtctctatggggtttaaaaccattcaatgggtttgtttcagGAAATTTGGAACAGTCCGTATTCCAATGATAGTTTTCCAGTTTATGCGGAGGAGATTGATGCAGGTGGTGATGCTTCTCCTTCAACGGCAATGCTTTCTG------


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tttaggatcacacttaagggaaggattgctaacttgttttgttttgtcttgtcagGAAATTTGGAACAGTCCTTATTCCAATGATAGTTTTTCTGTCTACGCTGAGGATATTGACGCCGGTGCTTCTCCTTCCACTGCCATGCTATCTGAACTCT
                          tgctaac  putative branch site (score: 1)
                                    ttttgttttgtctt  putative PPT
                                    ttttgtttt  TA-rich tract