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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATACATCTTTTTGATATTGACATCCCTGGGAAGATTACTTTTATTGAATCAAAAACTCTTACTGTTGGGGAGACTCTGACAATTGTGGACACAGgtctaaacatgttctttgatcccgcattcaaactcattcactttagttctatctgttttagtactaatatagtcttttgttctgcgatcatgtttgttgt...

Basic information

species Glycine max
transcript GLYMA20G02020.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA20G02020.1 (Glycine max), 5'ss of exon 3
lower sequence: LOC_Os03g07910.1 (Oryza sativa), 5'ss of exon 4
ATACATCTTTTTGATATTGACATCCCTGGGAAGATTACTTTTATTGAATCAAAAACTCTTACTGTTGGGGAGACTCTGACAATTGTGGACACAGgtctaaacatgttctttgatcccgcattcaaactcattcactttagttctatctgttttagtactaatatagtcttttgttctgcgatcatgtttgttgt-------
|| ||||||||||| |||||||| ||||| |||||||| || |  ||||| || |||||||||| |||| ||  ||| ||  |||| ||||||||| |        |  ||  ||  |  | |  |   ||   ||    ||      |||   | || |       | | ||| |  |    |  |||| | |       
ATCCATCTTTTTGACATTGACATTCCTGGAAAGATTACATTCAAGGAATCGAAGACTCTTACTGCTGGGCAGGATCTTACTGTTGTAGACACAGgtttgt-----cttattagtctggagtactgaagaat--gctaggattaagatggttcctgaaccatagggtgcctctgtgcatctccaaattttggtttggacagt

upper sequence: GLYMA20G02020.1 (Glycine max), 5'ss of exon 3
lower sequence: AT5G12040.2 (Arabidopsis thaliana), 5'ss of exon 4
ATACATCTTTTTGATATTGACATCCCTGGGAAGATTACTTTTATTGAATCAAAAACTCTTACTGTTGGGGAGACTCTGACAATTGTGGACACAGgtc-taaacatgttctttgatcccgcattcaaactcattcactttagttctatctgttttagtactaatatagtcttttgttctgcgatcatgtttgttgt-
|||||| | |||||||| ||||| || ||||||||||||||||| ||||| ||||||||||||| ||| ||||| |  ||||| || |||||||||  ||| | || | |   |      |||| |  |||| || |  |     || | | |||  |  ||   | | |  |  | |   |  ||  |  ||   
ATACATTTATTTGATATAGACATTCCCGGGAAGATTACTTTTATGGAATCCAAAACTCTTACTGCTGGAGAGACACCAACAATCGTTGACACAGgttataatcttggtttgccaaatataattccaggtcatgca-taaacaatcatgtatctta-cataaactcattgtggtactatctaaaaataataatttag

upper sequence: GLYMA20G02020.1 (Glycine max), 5'ss of exon 3
lower sequence: Vv04s0008g01690.t01 (Vitis vinifera), 5'ss of exon 4
ATACATCTTTTTGATATTGACATCCCTGGGAAGATTACTTTTATTGAATCAAAAACTCTTACTGTTGGGGAGACTCTGACAATTGTGGACACAGgtctaa-acatgttctt-tgatcccgcattcaaactca--ttcactttagttc-tatctgttttagtactaatat-agtcttttgttctgcgatcatgtttgttgt
||||| |||||||||||  |||| ||||||||||| || ||||| ||||||||||||||||| |  || |  | ||  |||||||| ||||||||||| |      | ||| | |||   | ||     | |  ||||| | ||    ||| |   ||  | |   ||| | ||||| | | | |   |   ||      
ATACACCTTTTTGATATCAACATTCCTGGGAAGATAACCTTTATGGAATCAAAAACTCTTACAGCAGGAGGAAGTCCCACAATTGTAGACACAGgtctgatgtgcttgcttgtaatctaacttttcccttgaggttcacctaagcctatattttgctttctgcatttatcaatctttgggtttacctaccaatt------