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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...attacatcaagtacgtgcattatgttcaaatcactttcttaataaccttgtaaatttatcttttatattttgttatcataagcttttccattttgtgcagATGTTGTTGTCGCACCTCCCTTTCTGTACATTGATCAAGTGAAAAACTCACTCACTGAGAGGATTGAAATATCTGCCCAGAATTCTTGGGTGGGAAAAGG

Basic information

species Glycine max
transcript GLYMA19G36990.2
intron # 3
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|23725706|gb|BU760816.1|BU760816
EST:     CAGTAAGCTTGTTGCTGACTTGAACAGTGCAAAATTGGAGCCTGATGTTG                         ATGTTGTGGTCGCACCTCCCTTTCTGTACATTGATCAAGTGAAAAACTCAC
genomic: CAGTAAGCTTGTTGCTGACTTGAACAGTGCAAAATTGGAGCCTGATGTTGgtgagacatg ... ttttgtgcagATGTTGTTGTCGCACCTCCCTTTCTGTACATTGATCAAGTGAAAAACTCAC
EST: gi|192294177|gb|FG986266.1|FG986266
EST:     CAGTAAGCTTGTTGCTGACTTGAACAGTGCAAAATTGGAGCCTGATGTTG                         ATGTTGTTGTCGCACCTCCCTTTCTGTACATTGATCAAGTGAAAAACTCAC
genomic: CAGTAAGCTTGTTGCTGACTTGAACAGTGCAAAATTGGAGCCTGATGTTGgtgagacatg ... ttttgtgcagATGTTGTTGTCGCACCTCCCTTTCTGTACATTGATCAAGTGAAAAACTCAC
EST: gi|19054173|gb|BM732840.1|BM732840
EST:     CAGTAAGCTTGTTGCTGACTTGAACAGTGCAAAATTGGAGCCTGATGTTG                         ATGTTGTTGTCGCACCTCCCTTTCTGTACATTGATCAAGTGAAAAACTCAC
genomic: CAGTAAGCTTGTTGCTGACTTGAACAGTGCAAAATTGGAGCCTGATGTTGgtgagacatg ... ttttgtgcagATGTTGTTGTCGCACCTCCCTTTCTGTACATTGATCAAGTGAAAAACTCAC
EST: gi|192303891|gb|FG998243.1|FG998243
EST:     CAGTAAGCTTGTTGCTGACTTGAACAGTGCAAAATTGGAGCCTGATGTTG                         ATGTTGTTGTCGCACCTCCCTTTCTGTACATTGATCAAGTGAAAAACTCAC
genomic: CAGTAAGCTTGTTGCTGACTTGAACAGTGCAAAATTGGAGCCTGATGTTGgtgagacatg ... ttttgtgcagATGTTGTTGTCGCACCTCCCTTTCTGTACATTGATCAAGTGAAAAACTCAC
EST: gi|20814775|gb|BQ299253.1|BQ299253
EST:     CAGTAAGCTTGTTGCTGACTTGAACAGTGCAAAATTGGAGCCTGATGTTG                         ATGTTGTTGTCGCACCTCCCTTTCTGTACGTTGATCAAGTGAAAAACTCAC
genomic: CAGTAAGCTTGTTGCTGACTTGAACAGTGCAAAATTGGAGCCTGATGTTGgtgagacatg ... ttttgtgcagATGTTGTTGTCGCACCTCCCTTTCTGTACATTGATCAAGTGAAAAACTCAC
EST: gi|7691290|gb|AW759483.1|AW759483
EST:     CAGTAAGCTTGTTGCTGACTTGAACAGTGCAAAATTGGAGCCTGATGTTG                         ATGTTGTTGTCGCACCTCCCTTTCTGTACATTGATCAAGTGAAAAACTCAC
genomic: CAGTAAGCTTGTTGCTGACTTGAACAGTGCAAAATTGGAGCCTGATGTTGgtgagacatg ... ttttgtgcagATGTTGTTGTCGCACCTCCCTTTCTGTACATTGATCAAGTGAAAAACTCAC
EST: gi|8283483|gb|BE021042.1|BE021042
EST:     GCTGACTTGAACAGTGCAAAATTGGAGCCTGATGTTG                         ATGTTGTTGTCGCACCTCCCTTTCTGTACATTGATCAAGTGAAAAACTCAC
genomic: GCTGACTTGAACAGTGCAAAATTGGAGCCTGATGTTGgtgagacatg ... ttttgtgcagATGTTGTTGTCGCACCTCCCTTTCTGTACATTGATCAAGTGAAAAACTCAC
EST: gi|15204307|gb|BI427075.1|BI427075
EST:     CAGTAAGCTTGTTGCTGACTTGAACAGTGCAAAATTGGAGCCTGATGTTG                         ATGTTGTTGTCGCACCTCCCTTTCTGTACATTGATCAAGTGAAAAACTCAC
genomic: CAGTAAGCTTGTTGCTGACTTGAACAGTGCAAAATTGGAGCCTGATGTTGgtgagacatg ... ttttgtgcagATGTTGTTGTCGCACCTCCCTTTCTGTACATTGATCAAGTGAAAAACTCAC
EST: gi|298173868|gb|HO017204.1|HO017204
EST:     CAGTAAGCTTGTTGCTGACTTGAACAGTGCAAAATTGGAGCCTGATGTTG                         ATGTTGTTGTCGCACCTCCCTTTCTGTACATTGATCAAGTGAAAAACTCAC
genomic: CAGTAAGCTTGTTGCTGACTTGAACAGTGCAAAATTGGAGCCTGATGTTGgtgagacatg ... ttttgtgcagATGTTGTTGTCGCACCTCCCTTTCTGTACATTGATCAAGTGAAAAACTCAC
EST: gi|17519271|gb|BM188313.1|BM188313
EST:     CAGTAAGCTTGTTGCTGACTTGAACAGTGCAAAATTGGAGCCTGATGTTG                         ATGTTGTTGTCGCACCTCCCTTTCTGTACATTGATCAAGTGAAAAACTCAC
genomic: CAGTAAGCTTGTTGCTGACTTGAACAGTGCAAAATTGGAGCCTGATGTTGgtgagacatg ... ttttgtgcagATGTTGTTGTCGCACCTCCCTTTCTGTACATTGATCAAGTGAAAAACTCAC
EST: gi|213590993|gb|DB973762.1|DB973762
EST:     CAGTAAGCTTGTTGCTGACTTGAACAGTGCAAAATTGGAGCCTGATGTTG                         ATGTTGTTGTCGCACCTCCCTTTCTGTACATTGATCAAGTGAAAAACTCAC
genomic: CAGTAAGCTTGTTGCTGACTTGAACAGTGCAAAATTGGAGCCTGATGTTGgtgagacatg ... ttttgtgcagATGTTGTTGTCGCACCTCCCTTTCTGTACATTGATCAAGTGAAAAACTCAC
EST: gi|8284792|gb|BE022351.1|BE022351
EST:     CAGTAAGCTTGTTGCTGACTTGAACAGTGCAAAATTGGAGCCTGATGTTG                         ATGTTGTTGTCGCACCTCCCTTTCTGTACATTGATCAAGTGAAAAACTCAC
genomic: CAGTAAGCTTGTTGCTGACTTGAACAGTGCAAAATTGGAGCCTGATGTTGgtgagacatg ... ttttgtgcagATGTTGTTGTCGCACCTCCCTTTCTGTACATTGATCAAGTGAAAAACTCAC
EST: gi|27425736|gb|CA937256.1|CA937256
EST:     CAGTAAGCTTGTTGCTGACTTGAACAGTGCAAAATTGGAGCCTGATGTTG                         ATGTTGTTGTCGCACCTCCCTTTCTGTACATTGATCAAGTGAAAAACTCAC
genomic: CAGTAAGCTTGTTGCTGACTTGAACAGTGCAAAATTGGAGCCTGATGTTGgtgagacatg ... ttttgtgcagATGTTGTTGTCGCACCTCCCTTTCTGTACATTGATCAAGTGAAAAACTCAC
EST: gi|120533074|gb|EH261207.1|EH261207
EST:     CAGTAAGCTTGTTGCTGACTTGAACAGTGCAAAATTGGAGCCTGATGTTG                         ATGTTGTTGTCGCACCTCCCTTTCTGTACATTGATCAAGTGAAAAACTCAC
genomic: CAGTAAGCTTGTTGCTGACTTGAACAGTGCAAAATTGGAGCCTGATGTTGgtgagacatg ... ttttgtgcagATGTTGTTGTCGCACCTCCCTTTCTGTACATTGATCAAGTGAAAAACTCAC
EST: gi|209724432|gb|BW666667.1|BW666667
EST:     CAGTAAGCTTGTTGCTGACTTGAACAGTGCAAAATTGGAGCCTGATGTTG                         ATGTTGTTGTCGCACCTCCCTTTCTGTACATTGATCAAGTGAAAAACTCAC
genomic: CAGTAAGCTTGTTGCTGACTTGAACAGTGCAAAATTGGAGCCTGATGTTGgtgagacatg ... ttttgtgcagATGTTGTTGTCGCACCTCCCTTTCTGTACATTGATCAAGTGAAAAACTCAC
EST: gi|192326679|gb|FK018521.1|FK018521
EST:     CAGTAAGCTTATTGCTGACTTGAACAGTGCAAAATTGGAGCCTGATGTTG                         ATGTTGTTGTCGCACCTCCCTTTCTGTACATTGATCAAGTGAAAAACTCAC
genomic: CAGTAAGCTTGTTGCTGACTTGAACAGTGCAAAATTGGAGCCTGATGTTGgtgagacatg ... ttttgtgcagATGTTGTTGTCGCACCTCCCTTTCTGTACATTGATCAAGTGAAAAACTCAC
EST: gi|192331703|gb|FK022805.1|FK022805
EST:     CAGTAAGCTTGTTGCTGACTTGAACAGTGCAAAATTGGAGCCTGATGTTG                         ATGTTGTTGTCGCACCTCCCTTTCTGTACATTGATCAAGTGAAAAACTCAC
genomic: CAGTAAGCTTGTTGCTGACTTGAACAGTGCAAAATTGGAGCCTGATGTTGgtgagacatg ... ttttgtgcagATGTTGTTGTCGCACCTCCCTTTCTGTACATTGATCAAGTGAAAAACTCAC
EST: gi|21993826|gb|BQ785354.1|BQ785354
EST:     CAGTAAGCTTGTTGCTGACTTGAACAGTGCAAAATTGGAGCCTGATGTTG                         ATGTTGTTGTCGCACCTCCCTTTCTGTACATTGATCAAGTGAAAAACTCAC
genomic: CAGTAAGCTTGTTGCTGACTTGAACAGTGCAAAATTGGAGCCTGATGTTGgtgagacatg ... ttttgtgcagATGTTGTTGTCGCACCTCCCTTTCTGTACATTGATCAAGTGAAAAACTCAC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ccttgtaaatttatcttttatattttgttatcataagcttttccattttgtgcagATGTTGTTGTCGCACCTCCCTTTCTGTACATTGATCAAGTGAAAAACTCACTCACTGAGAGGATTGAAATATCTGCCCAGAATTCTTGGGTGGGAAAAGG
                                     cttttccattttgt  CT-rich tract
     taaatttatcttttat  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
attacatcaagtacgtgcattatgttcaaatcactttcttaataaccttgtaaatttatcttttatattttgttatcataagcttttccattttgtgcagATGTTGTTGTCGCACCTCCCTTTCTGTACATTGATCAAGTGAAAAACTCACTCACTGAGAGGATTGAAATATCTGCCCAGAATTCTTGGGTGGGAAAAGG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT