Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GATAGGAATGAATGCTATGCTAGTGTTTGTGATGGCAGCCGAGGGCATCTTTGCAGCATTTGTAAATGGATGGTATTGTGAAAATCCACGTAACTCACTAgtaagaaccaattaaccgctttttaatttatattgcaagcatatgataatttttatttggtgctgtgctaattattgtatatatatggccttctttaactatcataatattttacaaatatttttaccccctttatcataattcataaggtagctaggacaaggaactaaccattgttgcacgtcaaacaatattcag

Basic information

species Glycine max
transcript GLYMA19G36920.1
intron # 13
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA19G36920.1 (Glycine max), 5'ss of exon 13
lower sequence: Vv08s0007g04880.t01 (Vitis vinifera), 5'ss of exon 12
GATAGGAATGAATGCTATGCTAGTGTTTGTGATGGCAGCCGAGGGCATCTTTGCAGCATTTGTAAATGGATGGTATTGTGAAAATCCACGTAACTCACTAgtaagaaccaattaaccgctttttaatttatattgcaagcatatgataatttttatttggtgctgtgctaattattgtatatatatggccttctttaactatcataatattttacaaatatttttaccccctttatcataattcataaggtagctaggacaaggaactaaccattgttgcacgtcaaacaatattcag
||| ||||||||||| |||||||||||||||||||||||  |||| ||||| || |||||  ||||||||||||||| ||||| | |   ||||||||| ||||| |  | ||  |   |  ||     || || |  | ||||||| ||||| |     | |||     |||||| |  ||||       |  |||| |  ||||| |    | || || | ||     |                                                                   
GATTGGAATGAATGCAATGCTAGTGTTTGTGATGGCAGCTCAGGGTATCTTCGCCGCATTCATAAATGGATGGTATTTTGAAAGTTCGGATAACTCACTGgtaagtagta-ttgtctattcattgggaaatctt-cttgtatatgatcattttcagagaatcctg-----attattttgaatat-------tacttaa-tggcataaga----aaaactactgttgtggtcag-----------------------------------------------------------------