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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagaaccaattaaccgctttttaatttatattgcaagcatatgataatttttatttggtgctgtgctaattattgtatatatatggccttctttaactatcataatattttacaaatatttttaccccctttatcataattcataaggtagctaggacaaggaactaaccattgttgcacgtcaaacaatattcagGTACACTGGATCAAGAAGCATGTGTTTGTCAATGTTTGGCACTCAGAGAGGGTGGGTACCATCTTATATGTCATCTTTGCAGAAATCACTTTCTGGAGTG

Basic information

species Glycine max
transcript GLYMA19G36920.1
intron # 13
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA19G36920.1 (Glycine max), 3'ss of exon 13
lower sequence: LOC_Os11g14080.1 (Oryza sativa), 3'ss of exon 10
gtaagaaccaattaaccgctttttaatttatattgcaagcatatgataatttttatttggtgctgtgctaattattgtatatatatggccttctttaa-ctatcataatattttacaaatatttttaccccctttatcataattcataaggtagctaggacaaggaactaaccattgttgcacgtcaaacaatattcagGTACACTGGATCAAGAAGCATGTGTTTGTCAATGTTTGGCACTCAGAGAGGGTGGGTACCATCTTATATGTCATCTTTGCAGAAATCACTTTCTGGAGTG
                                                                  |  | | | | | | |  | |    | ||||| | ||||| | |   |    | || |  |          || | ||  | |  |   |  ||   ||    | |||||     |    ||| ||| | |||||   ||||||| |||||||||||||| ||||||| ||||||||| | ||| |||| ||  |  | |||||||| ||||  || ||    |||||| |||
------------------------------------------------------------------gtaagtaactttgt-tgcaagtttatttttaatccatcatgacagcatggtgacatctaca--------ggcaaagttt-tgacatgagtttgatttggtttaatccattacctaaa---aaaaaatctgcagGTTAGCTGGATCCAGAAGCATGTGTTTATCAATGTATGGCACTCACAAAGGTTGGGAACACTGCTGTATGTCATATTTGGGGAGATTGTCTTCTGGGGTG

upper sequence: GLYMA19G36920.1 (Glycine max), 3'ss of exon 13
lower sequence: Vv08s0007g04880.t01 (Vitis vinifera), 3'ss of exon 12
gtaagaaccaattaaccgctttttaatttatattgcaagcatatgataatttttatttggtgctgtgctaattattgtatatatat--ggccttctttaactatcataatattttacaaatatttttaccccctttatcataattcataaggtagctaggacaaggaactaaccattgttgcacgtcaaacaatattcagGTACACTGGATCAAGAAGCATGTGTTTGTCAATGTTTGGCACTCAGAGAGGGTGGGTACCATCTTATATGTCATCTTTGCAGAAATCACTTTCTGGAGTG
                                                                ||    | |||||| |||  ||  ||   ||||    ||| || ||  ||| || | | |  |      |||   ||| | | |||      | | | ||| ||  ||| | |||||            |  |||||| || |||||| | |  ||||| ||| |  | |||||||||||||||||| |||| ||  |||||||||| || ||||| || ||||| ||||||   |
----------------------------------------------------------------gtaagtagtattgtctattcattgggaaatcttcttgtat-atgatcattttcagagaatcctgattattttga-atattacttaa------tggcataagaaa--aactactgttg------------tggtcagGTTCATTGGATCCAAAGACATGTTTTTATTGACGTTTGGCACTCAGAGAGGTTGGGGACTCTCTTATATGTGATATTTGCTGAGATCACATTCTGGGCCG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cataaggtagctaggacaaggaactaaccattgttgcacgtcaaacaatattcagGTACACTGGATCAAGAAGCATGTGTTTGTCAATGTTTGGCACTCAGAGAGGGTGGGTACCATCTTATATGTCATCTTTGCAGAAATCACTTTCTGGAGTG
                     aactaac  putative branch site (score: 1)
                                          aaacaatatt  TA-rich tract