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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaggtacaaatgtagaaaaattctttgagttattaatatataattgtttttttttcctttggttttatctctcattgcgattctgatctttaccactcttggaaattaattaaacagATAGATGTTTGGGGGCTCCGCACTCCATTCTTGTTCTTGGAGTGGATAGGAATGAATGCTATGCTAGTGTTTGTGATGGCAGCCGAGGGCATCTTTGCAG

Basic information

species Glycine max
transcript GLYMA19G36920.1
intron # 12
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA19G36920.1 (Glycine max), 3'ss of exon 12
lower sequence: LOC_Os11g14080.1 (Oryza sativa), 3'ss of exon 9
gtaggtacaaatgtagaaaaattctttgagttattaatatataattgtttttttttcctttggttttatctctcattgcgattctgatctttaccactcttggaaattaattaaacagATAGATGTTTGGGGGCTCCGCACTCCATTCTTGTTCTTGGAGTGGATAGGAATGAATGCTATGCTAGTGTTTGTGATGGCAGCCGAGGGCATCTTTGCAG
  |||  ||  | || |  |   ||    | |||  |  |  | |  |  ||||       | |||||  | |  ||        |||  |||    | |     ||||||     |||| ||||| ||||| ||  | || |||||||||||| |||||||||| || |||||||| ||||| ||||||||  | |||||  |||  || ||| |||
--aggccca--tctaaacgaggcct----gatatggaatttcagtactcattttcatgaccgattttaattttatttatttactggattattattttttt-----attaat-----agATTGATGTCTGGGGACTAAGAACACCATTCTTGTTCCTGGAGTGGATTGGCATGAATGCCATGCTTGTGTTTGTTCTAGCAGCACAGGCAATATTTCCAG

upper sequence: GLYMA19G36920.1 (Glycine max), 3'ss of exon 12
lower sequence: Vv08s0007g04880.t01 (Vitis vinifera), 3'ss of exon 11
---------------gtaggtacaaatgtagaaaaattctttgagttattaatatataattgtttttttttcctttggttttatctctcattgcgattctgatctttaccactcttggaaattaattaaacagATAGATGTTTGGGGGCTCCGCACTCCATTCTTGTTCTTGGAGTGGATAGGAATGAATGCTATGCTAGTGTTTGTGATGGCAGCCGAGGGCATCTTTGCAG
                 || |  |||| | || |  || ||   ||  || | | ||||||  || |     |   ||    ||   |  ||    |||  ||  |   |   ||    |  | | ||||||||| |||||||||||  | || || |||||||| ||| | |||||||| ||||||||||| |||||||||||||||||||||||  |||| ||||| || |
gtaaaacagttcaatccagatg-aaatattgacatttttttctggt--ttcaaagataattaattatagaatcccaggaga-ataatttgttttttttcccattgtgttcttcctcttca--tgagtaaacagATTGATGTTTGGGGATTTCGGACACCATTCTTATTCCTAGAGTGGATTGGAATGAATGCAATGCTAGTGTTTGTGATGGCAGCTCAGGGTATCTTCGCCG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttttatctctcattgcgattctgatctttaccactcttggaaattaattaaacagATAGATGTTTGGGGGCTCCGCACTCCATTCTTGTTCTTGGAGTGGATAGGAATGAATGCTATGCTAGTGTTTGTGATGGCAGCCGAGGGCATCTTTGCAG
                                         aattaat  putative branch site (score: 3)
                                    ttggaaattaattaaa  TA-rich tract