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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TATGCTAGTTGCCTGTACTGCTGGGTTTGTGTTGCAGTGGCGCCTTGCCCTTGTCCTCGTTGCTGTCTTTCCTGTTGTTGTTGCAGCCACTGTTTTGCAGgtttgttttttgtagatttctttcttgacatgttttgccattcaattctgtgttttcatttgtattttgttgggttttatacag

Basic information

species Glycine max
transcript GLYMA19G36820.1
intron # 9
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA19G36820.1 (Glycine max), 5'ss of exon 9
lower sequence: Vv08s0007g05060.t01 (Vitis vinifera), 5'ss of exon 9
TATGCTAGTTGCCTGTACTGCTGGGTTTGTGTTGCAGTGGCGCCTTGCCCTTGTCCTCGTTGCTGTCTTTCCTGTTGTTGTTGCAGCCACTGTTTTGCAGgtttgttttttgtagatttctttcttgacatgttttgccattcaa-ttctgtgttttcatttgtattttgttgggttttatacag---------------
 |||||||||||||| ||||| |||||||| || |||||||||||||||||||||||| | || ||||| ||||||||||||||||||||||||||||||||||||| |||      ||| |        | | |||   ||    ||| |    || ||| ||  |    |      | |                   
CATGCTAGTTGCCTGCACTGCAGGGTTTGTTTTACAGTGGCGCCTTGCCCTTGTCCTCATAGCCGTCTTCCCTGTTGTTGTTGCAGCCACTGTTTTGCAGgtttgttctttaactgattcctcaaaattttatcttgaagtttggcttcagcaaattaattggtcatccagtaaaacatttgggatgatagtggtagcca