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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGGTAGGCCTGATGCAGACCAGGTTGAGATTGAAGAAGCTGCCAGGGTTGCTAATGCTCATTCCTTCATCATTAAACTTCCTGATGGCTATGAAACCCAGgttagtcatctttgttttatgaaaatggctcctggaattgtatgtgtagtgatgaattgatgattgcccttttaaactagtcacatcattggatttgaat...

Basic information

species Glycine max
transcript GLYMA19G36820.1
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA19G36820.1 (Glycine max), 5'ss of exon 7
lower sequence: AT2G36910.1 (Arabidopsis thaliana), 5'ss of exon 7
GGGTAGGCCTGATGCAGACCAGGTTGAGATTGAAGAAGCTGCCAGGGTTGCTAATGCTCATTCCTTCATCATTAAACTTCCTGATGGCTATGAAACCCAGgttagtcatctttgttttatgaaaatggctcctggaattgtatgtgtagtgatgaattgatgattgcccttttaaactagtcacatcattggatttgaat-------
 ||  | ||||| ||||| || || ||||| || || |||||  | || || |||||||||||||| ||||| ||||| ||||||||||  || || |||||  |     ||     | ||||  ||  | ||    |||| | |  | | ||  |||  |    |   |||| ||  ||||| |  |  | |   | ||       
AGGCCGTCCTGACGCAGATCAAGTCGAGATAGAGGAGGCTGCTCGAGTCGCAAATGCTCATTCCTTTATCATCAAACTACCTGATGGCTTCGACACACAGgtctgatggttta----tgtgaatctgtgttctt---ttgtttcttcaattattcattagtttaaggtattttgaaagagtcaaaagagagaagaggtatggtcatg

upper sequence: GLYMA19G36820.1 (Glycine max), 5'ss of exon 7
lower sequence: Vv08s0007g05060.t01 (Vitis vinifera), 5'ss of exon 7
GGGTAGGCCTGATGCAGACCAGGTTGAGATTGAAGAAGCTGCCAGGGTTGCTAATGCTCATTCCTTCATCATTAAACTTCCTGATGGCTATGAAACCCAGgttagtcatctttgttttatgaaaatggctcctggaattgtatgtgtagtgatgaattgatgattgcccttttaaactagtcacatcattgg-atttgaat--
|||||||||||| |||  |   ||||||||||||||||||||||| |||||||||||  |||| |||||  | || ||||| || |||| ||| || |||||||| ||   | |  | ||           ||  |     | |  |||  || ||||  |  |   |  | | | | |     |  |||   ||||  ||  
GGGTAGGCCTGACGCAACCTTAGTTGAGATTGAAGAAGCTGCCAGAGTTGCTAATGCCTATTCATTCATAGTGAAGCTTCCCGAAGGCTTTGACACTCAGgttagccacagtagcataatttttggttaatctaaagggaaaggcctag-aataaatt--ttttctgcagtctcacccatcagaactattcatatttatatca