Sequence
atgc intronic sequence ATGC exonic sequenceTCTTCTCGAAAGGTGAAAATGGAGTCTATGCCAAGCTTATAAAGATGCAGGAGATGGCTCATGAAACTGCCATGAATAATGCCAGAAAGAGTAGTGCAAGgtagctttcactaatatttaacattggcattctttgaaaaaactgtttgaagttaattttcattgttttttaaagtttattaatcctttggctactgaatattccaagctgatatgtcatctcatgacattttcatttgcag
Basic information
species | Glycine max |
transcript | GLYMA19G36820.1 |
intron # | 8 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA19G36820.1 (Glycine max), 5'ss of exon 8
lower sequence: AT2G36910.1 (Arabidopsis thaliana), 5'ss of exon 8
TCTTCTCGAAAGGTGAAAATGGAGTCTATGCCAAGCTTATAAAGATGCAGGAGATGGCTCATGAAACTGCCATGAATAATGCCAGAAAGAGTAGTGCAAGgta-gctttcactaatatttaacattggcattctttgaaaaaactgtttgaagttaattttcattgttttttaaagtttattaatcctttggctactgaatattccaagctgatatgtcatctcatgacattttcatttgcag
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TTTTTTCCAAGGGAGAAAATGGAGTCTATGCTAAGCTAATTAAAATGCAAGAAGCAGCTCACGAAACCGCCATGAGCAATGCAAGAAAGAGTAGCGCAAGgtatactcttatt--cattttgtgtttgttttttgt----------tttgatgatgcttttttttgggttactga---tgttaatctatttgttgcag---------------------------------------------
upper sequence: GLYMA19G36820.1 (Glycine max), 5'ss of exon 8
lower sequence: Vv08s0007g05060.t01 (Vitis vinifera), 5'ss of exon 8
TCTTCTCGAAAGGTGAAAATGGAGTCTATGCCAAGCTTATAAAGATGCAGGAGATGGCTCATGAAACTGCCATGAATAATGCCAGAAAGAGTAGTGCAAGgtagctttcactaatatttaacattggcattctttgaaaaaactgtttgaagttaattttcattgttttttaaagtttattaatcctttggctactgaatattccaagctgatatgtcatctcatgacattttcatttgcag
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TCATAGCCAAAGGAGAAAATGGTGTATATGCAAAGCTCATCAGAATGCAGGAGACAGCGCATGAAACCGCTCTGAGTAACGCCAGAAAGAGTAGTGCAAGgtagcctccactaaattcttatctc----tttcatatggatattttctattattcccacatactggtgtcatggcatgctctactttaacactgctcttcatctgcag----------------------------------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|298178804|gb|HO024539.1|HO024539EST: GAGATGGCTCATGAAACTGCCATGAATAATGCCAGAAAGAGTAGTGCAAG GCCGTCGAGTGCCAGAAACTCTGTAAGCTCACCAATAATTGCTAGGAATTC
genomic: GAGATGGCTCATGAAACTGCCATGAATAATGCCAGAAAGAGTAGTGCAAGgtagctttca ... tcatttgcagGCCGTCGAGTGCCAGAAACTCTGTAAGCTCACCAATAATTGCTAGGAATTC
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
TCTTCTCGAAAGGTGAAAATGGAGTCTATGCCAAGCTTATAAAGATGCAGGAGATGGCTCATGAAACTGCCATGAATAATGCCAGAAAGAGTAGTGCAAGgtagctttcactaatatttaacattggcattctttgaaaaaactgtttgaagttaattttcattgttttttaaagtttattaatcctttggctactgaatattccaagctgatatgtcatctcatgacattttcatttgcag
- - - - - - - - - - - - - - - - - - - - - - - - - GAGATG